miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 4553 0.67 0.690245
Target:  5'- cGACG-GCGgcAUUGACGCGUauauaGCGGCAa -3'
miRNA:   3'- cCUGUaCGCa-UAGUUGCGCG-----CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 26183 0.67 0.690245
Target:  5'- aGGACGgucUGCGg--CcGCGCG-GCGGCc -3'
miRNA:   3'- -CCUGU---ACGCauaGuUGCGCgCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 9894 0.67 0.679204
Target:  5'- --uCAUGCucGUCGucgGCGCGCGGCGu -3'
miRNA:   3'- ccuGUACGcaUAGUug-CGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 21626 0.67 0.679204
Target:  5'- aGGCgcaGUGCGg--CGACGCGCGgcguaUGGCAc -3'
miRNA:   3'- cCUG---UACGCauaGUUGCGCGC-----GCCGU- -5'
24322 5' -54.4 NC_005263.2 + 8261 0.67 0.679204
Target:  5'- cGGGUAUGCGcGUucggacggccaCAGCGCGaGCGGCGu -3'
miRNA:   3'- -CCUGUACGCaUA-----------GUUGCGCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 17015 0.67 0.668115
Target:  5'- -aGCGUuCGUAUCGcucgagcaGCGCGuCGCGGCc -3'
miRNA:   3'- ccUGUAcGCAUAGU--------UGCGC-GCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 46962 0.67 0.668115
Target:  5'- cGGAUAcGCGgugCAACGCcguGCGCaGCAc -3'
miRNA:   3'- -CCUGUaCGCauaGUUGCG---CGCGcCGU- -5'
24322 5' -54.4 NC_005263.2 + 14433 0.67 0.656993
Target:  5'- --cCAUGCGa--CGGCGUGCGCGcGCGc -3'
miRNA:   3'- ccuGUACGCauaGUUGCGCGCGC-CGU- -5'
24322 5' -54.4 NC_005263.2 + 40436 0.67 0.656993
Target:  5'- uGGCAUGUGaAUaCAGCGgGCGUGuGCGc -3'
miRNA:   3'- cCUGUACGCaUA-GUUGCgCGCGC-CGU- -5'
24322 5' -54.4 NC_005263.2 + 1862 0.67 0.656993
Target:  5'- cGACGUGCGguUCuGGCGCGCcUGGCc -3'
miRNA:   3'- cCUGUACGCauAG-UUGCGCGcGCCGu -5'
24322 5' -54.4 NC_005263.2 + 25276 0.67 0.656993
Target:  5'- -uGCAUGCcgAUCcGCGCGCGCGaCAg -3'
miRNA:   3'- ccUGUACGcaUAGuUGCGCGCGCcGU- -5'
24322 5' -54.4 NC_005263.2 + 32907 0.67 0.656993
Target:  5'- cGGAa--GCGcuugcCGACGuCGCGCGGCGg -3'
miRNA:   3'- -CCUguaCGCaua--GUUGC-GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 37433 0.67 0.656993
Target:  5'- --uCGU-CGUcauacGUCGGCGCGCGCGGUc -3'
miRNA:   3'- ccuGUAcGCA-----UAGUUGCGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 9209 0.67 0.645846
Target:  5'- cGGGCG-GCGc-UCGuACgGCGCGCGGUAc -3'
miRNA:   3'- -CCUGUaCGCauAGU-UG-CGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 32547 0.67 0.645846
Target:  5'- --uUcgGCGU-UCAGCGCGCGCGucuGCGc -3'
miRNA:   3'- ccuGuaCGCAuAGUUGCGCGCGC---CGU- -5'
24322 5' -54.4 NC_005263.2 + 35530 0.67 0.645846
Target:  5'- cGAC-UGCGcccggCGGCGCGCG-GGCGg -3'
miRNA:   3'- cCUGuACGCaua--GUUGCGCGCgCCGU- -5'
24322 5' -54.4 NC_005263.2 + 2712 0.68 0.634687
Target:  5'- aGGuGCAUGCG---CAGCGCGCGU-GCAu -3'
miRNA:   3'- -CC-UGUACGCauaGUUGCGCGCGcCGU- -5'
24322 5' -54.4 NC_005263.2 + 22172 0.68 0.634687
Target:  5'- cGACGUGaCGUA-CGAUGCGaCGacCGGCAa -3'
miRNA:   3'- cCUGUAC-GCAUaGUUGCGC-GC--GCCGU- -5'
24322 5' -54.4 NC_005263.2 + 43301 0.68 0.623526
Target:  5'- cGGGCG-GCGUAUgAgcgucACGCGaCGCGGg- -3'
miRNA:   3'- -CCUGUaCGCAUAgU-----UGCGC-GCGCCgu -5'
24322 5' -54.4 NC_005263.2 + 24782 0.68 0.623526
Target:  5'- cGGGCGgcgucgGCGgcUCGcCGgGCGuCGGCGg -3'
miRNA:   3'- -CCUGUa-----CGCauAGUuGCgCGC-GCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.