miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24323 3' -58.6 NC_005263.2 + 8348 0.66 0.508963
Target:  5'- gUCUUuGCCGagcUUGCCGAGGUCGCu--- -3'
miRNA:   3'- -AGGAcCGGC---AGUGGCUCCAGCGcuuc -5'
24323 3' -58.6 NC_005263.2 + 47636 0.66 0.485623
Target:  5'- gUCCUGGCggccuuugcauucgCGUCAgCGGGGcucuauuacgUCGCGgcGa -3'
miRNA:   3'- -AGGACCG--------------GCAGUgGCUCC----------AGCGCuuC- -5'
24323 3' -58.6 NC_005263.2 + 44883 0.67 0.47862
Target:  5'- aCCU-GUCGUCGcCCGAGGUCGgccCGAu- -3'
miRNA:   3'- aGGAcCGGCAGU-GGCUCCAGC---GCUuc -5'
24323 3' -58.6 NC_005263.2 + 44193 0.67 0.468704
Target:  5'- gCCU-GCCGgugcagaaagaCACCGAGGgUGCGAAGu -3'
miRNA:   3'- aGGAcCGGCa----------GUGGCUCCaGCGCUUC- -5'
24323 3' -58.6 NC_005263.2 + 28326 0.67 0.458893
Target:  5'- aUCUGGUCGgcCGCCGAGccCGUGAGGc -3'
miRNA:   3'- aGGACCGGCa-GUGGCUCcaGCGCUUC- -5'
24323 3' -58.6 NC_005263.2 + 25885 0.67 0.458893
Target:  5'- aCCgGGCCGaCGCCGGcgacGGcCGCGAc- -3'
miRNA:   3'- aGGaCCGGCaGUGGCU----CCaGCGCUuc -5'
24323 3' -58.6 NC_005263.2 + 1434 0.67 0.449194
Target:  5'- cCUUGGCUG-CGCgCGAGGcuUCGCGGc- -3'
miRNA:   3'- aGGACCGGCaGUG-GCUCC--AGCGCUuc -5'
24323 3' -58.6 NC_005263.2 + 23246 0.69 0.358956
Target:  5'- aUCCUGGCCGUagcCGCCGGcuGG-CGCa--- -3'
miRNA:   3'- -AGGACCGGCA---GUGGCU--CCaGCGcuuc -5'
24323 3' -58.6 NC_005263.2 + 12668 0.69 0.350656
Target:  5'- ---cGGCCGgcgCGCCGGGGUCGUc--- -3'
miRNA:   3'- aggaCCGGCa--GUGGCUCCAGCGcuuc -5'
24323 3' -58.6 NC_005263.2 + 39882 0.69 0.342494
Target:  5'- gCCgUGGUCGgggUCGCCGGcugucgaagcGGUCGUGAAGa -3'
miRNA:   3'- aGG-ACCGGC---AGUGGCU----------CCAGCGCUUC- -5'
24323 3' -58.6 NC_005263.2 + 42570 0.7 0.308973
Target:  5'- gCCaGGCCGUUGCCGGccacGGcaugaccuauauccUCGCGAAGg -3'
miRNA:   3'- aGGaCCGGCAGUGGCU----CC--------------AGCGCUUC- -5'
24323 3' -58.6 NC_005263.2 + 10164 0.7 0.296428
Target:  5'- gCUUGG-CGUCGCCGAGaG-CGCGAAu -3'
miRNA:   3'- aGGACCgGCAGUGGCUC-CaGCGCUUc -5'
24323 3' -58.6 NC_005263.2 + 40894 0.72 0.242699
Target:  5'- cUUCUGGUCGcCGgCGAuGGUCGCGGAc -3'
miRNA:   3'- -AGGACCGGCaGUgGCU-CCAGCGCUUc -5'
24323 3' -58.6 NC_005263.2 + 22222 0.72 0.230599
Target:  5'- ---cGGCCGUCGCCGGcgucggcccGGUUGCGAc- -3'
miRNA:   3'- aggaCCGGCAGUGGCU---------CCAGCGCUuc -5'
24323 3' -58.6 NC_005263.2 + 44513 1.09 0.000423
Target:  5'- aUCCUGGCCGUCACCGAGGUCGCGAAGa -3'
miRNA:   3'- -AGGACCGGCAGUGGCUCCAGCGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.