miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24323 5' -59.1 NC_005263.2 + 28004 0.66 0.441065
Target:  5'- cUGCGCgGCGACGCU-GGuCGAccaGACGc -3'
miRNA:   3'- -AUGCGgCGCUGCGAaCC-GCUc--CUGUa -5'
24323 5' -59.1 NC_005263.2 + 18686 0.66 0.441065
Target:  5'- cGCGCagcaagcuaGCGGCGCggcaGGCGcGGGCGg -3'
miRNA:   3'- aUGCGg--------CGCUGCGaa--CCGCuCCUGUa -5'
24323 5' -59.1 NC_005263.2 + 17539 0.66 0.431406
Target:  5'- cGCGCaGCGGCGUgaagucguugUGG-GAGGACGUc -3'
miRNA:   3'- aUGCGgCGCUGCGa---------ACCgCUCCUGUA- -5'
24323 5' -59.1 NC_005263.2 + 31079 0.66 0.431406
Target:  5'- cUugGCCGCGACGCgcugcuCGAGcGAUAc -3'
miRNA:   3'- -AugCGGCGCUGCGaacc--GCUC-CUGUa -5'
24323 5' -59.1 NC_005263.2 + 16659 0.66 0.431406
Target:  5'- gGCGCuCGCGuCGUUcGGCGugaacauucagcAGGACGUg -3'
miRNA:   3'- aUGCG-GCGCuGCGAaCCGC------------UCCUGUA- -5'
24323 5' -59.1 NC_005263.2 + 21575 0.67 0.403192
Target:  5'- aGCGCCGCGugcuCGCcgccGGCGucGACGc -3'
miRNA:   3'- aUGCGGCGCu---GCGaa--CCGCucCUGUa -5'
24323 5' -59.1 NC_005263.2 + 30621 0.67 0.39405
Target:  5'- cGCGCCGCG-CGCgaucagGGCGuucauGACGUa -3'
miRNA:   3'- aUGCGGCGCuGCGaa----CCGCuc---CUGUA- -5'
24323 5' -59.1 NC_005263.2 + 15363 0.67 0.39405
Target:  5'- uUGCGCCGCGcaagcggcaGCGCguacguugcaUUGGCGAuccgcacggcGGGCAg -3'
miRNA:   3'- -AUGCGGCGC---------UGCG----------AACCGCU----------CCUGUa -5'
24323 5' -59.1 NC_005263.2 + 29517 0.67 0.367445
Target:  5'- gGCGuCCGuCGGCGCgccagcagUGGCcGGGACGc -3'
miRNA:   3'- aUGC-GGC-GCUGCGa-------ACCGcUCCUGUa -5'
24323 5' -59.1 NC_005263.2 + 714 0.67 0.358854
Target:  5'- cGC-CCGCGAgCGCcgUGGCGAGGuuGa -3'
miRNA:   3'- aUGcGGCGCU-GCGa-ACCGCUCCugUa -5'
24323 5' -59.1 NC_005263.2 + 21193 0.68 0.325917
Target:  5'- gACGCgCGCGGCGCg-GGCGAGuGGg-- -3'
miRNA:   3'- aUGCG-GCGCUGCGaaCCGCUC-CUgua -5'
24323 5' -59.1 NC_005263.2 + 45887 0.68 0.325917
Target:  5'- cACGCCGUGAuCGCgcaggGGCGAaagaccagauguGGGCGa -3'
miRNA:   3'- aUGCGGCGCU-GCGaa---CCGCU------------CCUGUa -5'
24323 5' -59.1 NC_005263.2 + 871 0.68 0.317262
Target:  5'- cACGCUGaCGACGCcgUUGGCGAucggaauGGugAUa -3'
miRNA:   3'- aUGCGGC-GCUGCG--AACCGCU-------CCugUA- -5'
24323 5' -59.1 NC_005263.2 + 35533 0.69 0.295278
Target:  5'- cUGCGCCcgGCGGCGCgcgGGCGGGcGCu- -3'
miRNA:   3'- -AUGCGG--CGCUGCGaa-CCGCUCcUGua -5'
24323 5' -59.1 NC_005263.2 + 19757 0.69 0.295278
Target:  5'- cGCGCUgGCGGCGCUcgUGGcCGuguGGGCAa -3'
miRNA:   3'- aUGCGG-CGCUGCGA--ACC-GCu--CCUGUa -5'
24323 5' -59.1 NC_005263.2 + 46095 0.69 0.273803
Target:  5'- aUGCGCCGCuGCGgaUUUGGCGcggccuAGGACAg -3'
miRNA:   3'- -AUGCGGCGcUGC--GAACCGC------UCCUGUa -5'
24323 5' -59.1 NC_005263.2 + 7499 0.7 0.260194
Target:  5'- -gUGCCGCGcacCGCUgacGGCGAGGuGCGUa -3'
miRNA:   3'- auGCGGCGCu--GCGAa--CCGCUCC-UGUA- -5'
24323 5' -59.1 NC_005263.2 + 14690 0.7 0.259528
Target:  5'- cGCGCgCGCGGCGCUcaaGGCGAucgacgccgauccGGAUAg -3'
miRNA:   3'- aUGCG-GCGCUGCGAa--CCGCU-------------CCUGUa -5'
24323 5' -59.1 NC_005263.2 + 23312 0.72 0.179882
Target:  5'- cGCGCCGcCGACGCccGGCGAGccgccGACGc -3'
miRNA:   3'- aUGCGGC-GCUGCGaaCCGCUC-----CUGUa -5'
24323 5' -59.1 NC_005263.2 + 44548 1.04 0.000657
Target:  5'- gUACGCCGCGACGCUUGGCGAGGACAUg -3'
miRNA:   3'- -AUGCGGCGCUGCGAACCGCUCCUGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.