miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24324 3' -53.5 NC_005263.2 + 13465 0.67 0.680312
Target:  5'- gGGCUGCcuGCGCUGCcauggggaACGAUCUACg- -3'
miRNA:   3'- gCUGACGu-CGUGGUG--------UGCUAGAUGgu -5'
24324 3' -53.5 NC_005263.2 + 41741 0.68 0.669092
Target:  5'- gCGGCaacuucggGCGGCACgGCGCGAUCaACgAg -3'
miRNA:   3'- -GCUGa-------CGUCGUGgUGUGCUAGaUGgU- -5'
24324 3' -53.5 NC_005263.2 + 42248 0.68 0.657835
Target:  5'- cCGcCUGCGGCucgacuucgACCGCACGAcg-GCCGa -3'
miRNA:   3'- -GCuGACGUCG---------UGGUGUGCUagaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 20225 0.68 0.635257
Target:  5'- cCGACUGC-GCGCCGC-CGGcCUuauCCAc -3'
miRNA:   3'- -GCUGACGuCGUGGUGuGCUaGAu--GGU- -5'
24324 3' -53.5 NC_005263.2 + 15445 0.68 0.635257
Target:  5'- aCGGCgcgagGCAGCGCgaaaugaGCgACGAUUUGCCGu -3'
miRNA:   3'- -GCUGa----CGUCGUGg------UG-UGCUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 42322 0.68 0.635257
Target:  5'- aCGGCgcaGCGGCGCgUGCGCGA-CUAUCAa -3'
miRNA:   3'- -GCUGa--CGUCGUG-GUGUGCUaGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 20315 0.68 0.623958
Target:  5'- aCGACgGCGauGUACCGCGCGAagcauggcCUGCCGc -3'
miRNA:   3'- -GCUGaCGU--CGUGGUGUGCUa-------GAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 3333 0.68 0.623958
Target:  5'- aCGuCUGCgcgccgccGGCGCCgcGCGCGGUCgagcgACCAg -3'
miRNA:   3'- -GCuGACG--------UCGUGG--UGUGCUAGa----UGGU- -5'
24324 3' -53.5 NC_005263.2 + 22675 0.68 0.620569
Target:  5'- cCGACgaaccccGCACCGCACGcgccgaggauggcuGUCUGCCAg -3'
miRNA:   3'- -GCUGacgu---CGUGGUGUGC--------------UAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 45417 0.68 0.612666
Target:  5'- --cCUGCcgAGCgGCCGCGCGAUCagcUACCAc -3'
miRNA:   3'- gcuGACG--UCG-UGGUGUGCUAG---AUGGU- -5'
24324 3' -53.5 NC_005263.2 + 36303 0.68 0.612666
Target:  5'- aCGACaUGCAGCGaCACGCGAcgUCcugcGCCAu -3'
miRNA:   3'- -GCUG-ACGUCGUgGUGUGCU--AGa---UGGU- -5'
24324 3' -53.5 NC_005263.2 + 32003 0.68 0.609282
Target:  5'- uCGGCUGCcguAGCugCGCGggugaacagccggcCGAUCUGCUc -3'
miRNA:   3'- -GCUGACG---UCGugGUGU--------------GCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 15891 0.69 0.601393
Target:  5'- -cGCUGCAGCuuuaCACGCuGAUCUcGCCGc -3'
miRNA:   3'- gcUGACGUCGug--GUGUG-CUAGA-UGGU- -5'
24324 3' -53.5 NC_005263.2 + 3427 0.69 0.601393
Target:  5'- -uGCUGCGGCGCCGuCGCGAcCUgguugACCu -3'
miRNA:   3'- gcUGACGUCGUGGU-GUGCUaGA-----UGGu -5'
24324 3' -53.5 NC_005263.2 + 1953 0.69 0.601393
Target:  5'- gCGAC-GcCGGCaACCGCGuCGAUCUGCUg -3'
miRNA:   3'- -GCUGaC-GUCG-UGGUGU-GCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 10762 0.69 0.578938
Target:  5'- gCGGCcGUcggcaucaaAGCugCGCGCGGUCUGCUu -3'
miRNA:   3'- -GCUGaCG---------UCGugGUGUGCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 21469 0.69 0.572235
Target:  5'- -cGCUGCGGCGCCACugGcaaauccggcgcaccGUCgauUACCGc -3'
miRNA:   3'- gcUGACGUCGUGGUGugC---------------UAG---AUGGU- -5'
24324 3' -53.5 NC_005263.2 + 22110 0.69 0.567776
Target:  5'- aCGGCUGCcgccGGCACgcugcaaGCGCGAUC-GCCGg -3'
miRNA:   3'- -GCUGACG----UCGUGg------UGUGCUAGaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 48023 0.69 0.567776
Target:  5'- cCGGCggGCAgGCGCUAUGCGAUuaCUACCu -3'
miRNA:   3'- -GCUGa-CGU-CGUGGUGUGCUA--GAUGGu -5'
24324 3' -53.5 NC_005263.2 + 14103 0.69 0.567776
Target:  5'- cCGGCUGCgcGGCggucGCCGuCGCGAUCguaGCCGc -3'
miRNA:   3'- -GCUGACG--UCG----UGGU-GUGCUAGa--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.