Results 21 - 40 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24324 | 5' | -64.7 | NC_005263.2 | + | 32626 | 0.66 | 0.267597 |
Target: 5'- -aUGCUC-ACCGCGcCGCcGCaGCaCGGCa -3' miRNA: 3'- caGCGAGcUGGCGC-GCGcCG-CG-GCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 16766 | 0.66 | 0.267597 |
Target: 5'- aGUCGCgccugaCGGCCGCcgGCGUauCGCCGGa -3' miRNA: 3'- -CAGCGa-----GCUGGCG--CGCGccGCGGCCg -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 34489 | 0.66 | 0.26376 |
Target: 5'- -gCGUUCGGCCGCGCGCaccCGUauuucaagaucaaaGGCg -3' miRNA: 3'- caGCGAGCUGGCGCGCGcc-GCGg-------------CCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 37389 | 0.66 | 0.261226 |
Target: 5'- cGUCGCccUGGCUGCGCGaCGugcaucGCGUCGcGCg -3' miRNA: 3'- -CAGCGa-GCUGGCGCGC-GC------CGCGGC-CG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 6241 | 0.66 | 0.261226 |
Target: 5'- aUCGCUCG-CgGCcagGCGCGGUcguGCCgucgGGCa -3' miRNA: 3'- cAGCGAGCuGgCG---CGCGCCG---CGG----CCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 36601 | 0.66 | 0.261226 |
Target: 5'- aUCGCgcgCGACCaGUGCaacaaGGCGaCGGCg -3' miRNA: 3'- cAGCGa--GCUGG-CGCGcg---CCGCgGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 24706 | 0.66 | 0.261226 |
Target: 5'- -gCGC-CGAaCGUGCcggGCGGCGCaGGCg -3' miRNA: 3'- caGCGaGCUgGCGCG---CGCCGCGgCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 3777 | 0.66 | 0.260596 |
Target: 5'- cGUCGCguucuggUCGGCCuuugcgaucuGCGagGCGaGCGCCGGa -3' miRNA: 3'- -CAGCG-------AGCUGG----------CGCg-CGC-CGCGGCCg -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 29458 | 0.66 | 0.260596 |
Target: 5'- uUCGC-CGGCaGCGUaccgccaGCGGCGcCCGGg -3' miRNA: 3'- cAGCGaGCUGgCGCG-------CGCCGC-GGCCg -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 32734 | 0.66 | 0.259339 |
Target: 5'- gGUCGCUaccCGACaGCGUGCGcaguacgacguucaGCGCCGcGUc -3' miRNA: 3'- -CAGCGA---GCUGgCGCGCGC--------------CGCGGC-CG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 43064 | 0.66 | 0.257463 |
Target: 5'- cGUCgGCcaauagUCGGCCGCcgggccggcugucgaGCGCGGCGgaaGGCa -3' miRNA: 3'- -CAG-CG------AGCUGGCG---------------CGCGCCGCgg-CCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 33641 | 0.66 | 0.254979 |
Target: 5'- aGUCGCUCGuCUGaggauugucaaGCGCGGagucgauGCgGGCg -3' miRNA: 3'- -CAGCGAGCuGGCg----------CGCGCCg------CGgCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 1168 | 0.66 | 0.254979 |
Target: 5'- cGUCGCggCGACUugugccucguGCuGCGCGGCagcgcguucuuCCGGCg -3' miRNA: 3'- -CAGCGa-GCUGG----------CG-CGCGCCGc----------GGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 27989 | 0.66 | 0.254979 |
Target: 5'- -gCGCUUG-CCGUaacccuGCGCGGCgacGCUGGUc -3' miRNA: 3'- caGCGAGCuGGCG------CGCGCCG---CGGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 29344 | 0.66 | 0.254979 |
Target: 5'- aUCaCUuucCGGgUGCGCGagcaGGCGCCGGUa -3' miRNA: 3'- cAGcGA---GCUgGCGCGCg---CCGCGGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 20734 | 0.66 | 0.254361 |
Target: 5'- -gCGC-CGGCCGC-CGCcGCGCCgcucgcuGGCg -3' miRNA: 3'- caGCGaGCUGGCGcGCGcCGCGG-------CCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 8794 | 0.66 | 0.248855 |
Target: 5'- --aGCcaaccugCGAUCGCGCGCGcauGCGCCuGCc -3' miRNA: 3'- cagCGa------GCUGGCGCGCGC---CGCGGcCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 6553 | 0.66 | 0.248855 |
Target: 5'- cUCGCaUCGccgccacggcgcGCCGCGCGUuuGCGCaGGCg -3' miRNA: 3'- cAGCG-AGC------------UGGCGCGCGc-CGCGgCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 6076 | 0.66 | 0.248855 |
Target: 5'- -gCGC-CGACaggaaGCcuugGCGCGGCcggccgcacuGCCGGCa -3' miRNA: 3'- caGCGaGCUGg----CG----CGCGCCG----------CGGCCG- -5' |
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24324 | 5' | -64.7 | NC_005263.2 | + | 23815 | 0.66 | 0.248855 |
Target: 5'- -cCGuCUUGAUCGuCGcCGCGaaaGCGCCGGUc -3' miRNA: 3'- caGC-GAGCUGGC-GC-GCGC---CGCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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