miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24325 3' -55 NC_005263.2 + 28108 0.69 0.545833
Target:  5'- aCGUGuCGAucgcAAGugCcGCGCCGGGg- -3'
miRNA:   3'- gGCACuGCU----UUCugGuCGCGGUCCag -5'
24325 3' -55 NC_005263.2 + 4658 0.77 0.174482
Target:  5'- ---cGACGGGcAGGCCGGCGCgCGGGUCu -3'
miRNA:   3'- ggcaCUGCUU-UCUGGUCGCG-GUCCAG- -5'
24325 3' -55 NC_005263.2 + 8690 0.75 0.222302
Target:  5'- aCCGgucGACGAcAGGugCGGCGaCAGGUCg -3'
miRNA:   3'- -GGCa--CUGCU-UUCugGUCGCgGUCCAG- -5'
24325 3' -55 NC_005263.2 + 7847 0.7 0.45226
Target:  5'- aCG-GGCGGAAGAUCAccGCGCCccAGGUg -3'
miRNA:   3'- gGCaCUGCUUUCUGGU--CGCGG--UCCAg -5'
24325 3' -55 NC_005263.2 + 32264 0.7 0.45226
Target:  5'- aUCGcGGCGA---GCCAcgcgaagcGCGCCAGGUCg -3'
miRNA:   3'- -GGCaCUGCUuucUGGU--------CGCGGUCCAG- -5'
24325 3' -55 NC_005263.2 + 35807 0.7 0.472345
Target:  5'- gCGUGcCGAAAccuGuCCAG-GCCGGGUCg -3'
miRNA:   3'- gGCACuGCUUU---CuGGUCgCGGUCCAG- -5'
24325 3' -55 NC_005263.2 + 45942 0.7 0.482555
Target:  5'- gCGUcucGCGccGGAUCAGCGCCAGG-Cg -3'
miRNA:   3'- gGCAc--UGCuuUCUGGUCGCGGUCCaG- -5'
24325 3' -55 NC_005263.2 + 29969 0.69 0.524395
Target:  5'- gCUGUGAgGAugauuACCAGCGCCAGuGcCa -3'
miRNA:   3'- -GGCACUgCUuuc--UGGUCGCGGUC-CaG- -5'
24325 3' -55 NC_005263.2 + 15619 0.69 0.535076
Target:  5'- aCGcGGCGAAGuucGugC-GCGCCAGGUUg -3'
miRNA:   3'- gGCaCUGCUUU---CugGuCGCGGUCCAG- -5'
24325 3' -55 NC_005263.2 + 30814 0.82 0.076962
Target:  5'- gCCGUGGCGAcu-GCCucGCGCCAGGUCu -3'
miRNA:   3'- -GGCACUGCUuucUGGu-CGCGGUCCAG- -5'
24325 3' -55 NC_005263.2 + 45112 1.12 0.000592
Target:  5'- gCCGUGACGAAAGACCAGCGCCAGGUCg -3'
miRNA:   3'- -GGCACUGCUUUCUGGUCGCGGUCCAG- -5'
24325 3' -55 NC_005263.2 + 14361 0.67 0.666848
Target:  5'- uUCGuUGACGAcGGGCCcGaUGCCGGGcCg -3'
miRNA:   3'- -GGC-ACUGCUuUCUGGuC-GCGGUCCaG- -5'
24325 3' -55 NC_005263.2 + 14153 0.68 0.611535
Target:  5'- gCCGccuUGGCGAcuucGGGCCGGCGgCCGGuGUg -3'
miRNA:   3'- -GGC---ACUGCUu---UCUGGUCGC-GGUC-CAg -5'
24325 3' -55 NC_005263.2 + 41245 0.66 0.721326
Target:  5'- cUCGUGcGCGAGGGcuACCuGuCGCC-GGUCg -3'
miRNA:   3'- -GGCAC-UGCUUUC--UGGuC-GCGGuCCAG- -5'
24325 3' -55 NC_005263.2 + 7407 0.68 0.611535
Target:  5'- uCCaGUGcgauGCGGGAGAUCGGCGCgucgagCAGGUa -3'
miRNA:   3'- -GG-CAC----UGCUUUCUGGUCGCG------GUCCAg -5'
24325 3' -55 NC_005263.2 + 22378 0.67 0.633675
Target:  5'- gUCGUGcACGGc--GCgCAGCGCCAGGa- -3'
miRNA:   3'- -GGCAC-UGCUuucUG-GUCGCGGUCCag -5'
24325 3' -55 NC_005263.2 + 11220 0.65 0.731999
Target:  5'- cCCGUGAUuuc--GCCAagcGCGCCcGGGUCg -3'
miRNA:   3'- -GGCACUGcuuucUGGU---CGCGG-UCCAG- -5'
24325 3' -55 NC_005263.2 + 23853 0.68 0.611535
Target:  5'- uUCGUGACu---GuCCAGUgcuucaGCCAGGUCg -3'
miRNA:   3'- -GGCACUGcuuuCuGGUCG------CGGUCCAG- -5'
24325 3' -55 NC_005263.2 + 8547 0.67 0.633675
Target:  5'- gCgGUGAUGAAugccgcGACCAGCGUCGuccaGUCg -3'
miRNA:   3'- -GgCACUGCUUu-----CUGGUCGCGGUc---CAG- -5'
24325 3' -55 NC_005263.2 + 30766 0.69 0.535076
Target:  5'- aCCGcGAUGccgaacgucGAAGccACCGGCGCCGGGcCg -3'
miRNA:   3'- -GGCaCUGC---------UUUC--UGGUCGCGGUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.