Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24325 | 3' | -55 | NC_005263.2 | + | 29969 | 0.69 | 0.524395 |
|
Target: 5'- gCUGUGAgGAugauuACCAGCGCCAGuGcCa -3' miRNA: 3'- -GGCACUgCUuuc--UGGUCGCGGUC-CaG- -5' |
|||||||
| 24325 | 3' | -55 | NC_005263.2 | + | 45942 | 0.7 | 0.482555 |
|
Target: 5'- gCGUcucGCGccGGAUCAGCGCCAGG-Cg -3' miRNA: 3'- gGCAc--UGCuuUCUGGUCGCGGUCCaG- -5' |
|||||||
| 24325 | 3' | -55 | NC_005263.2 | + | 35807 | 0.7 | 0.472345 |
|
Target: 5'- gCGUGcCGAAAccuGuCCAG-GCCGGGUCg -3' miRNA: 3'- gGCACuGCUUU---CuGGUCgCGGUCCAG- -5' |
|||||||
| 24325 | 3' | -55 | NC_005263.2 | + | 7847 | 0.7 | 0.45226 |
|
Target: 5'- aCG-GGCGGAAGAUCAccGCGCCccAGGUg -3' miRNA: 3'- gGCaCUGCUUUCUGGU--CGCGG--UCCAg -5' |
|||||||
| 24325 | 3' | -55 | NC_005263.2 | + | 32264 | 0.7 | 0.45226 |
|
Target: 5'- aUCGcGGCGA---GCCAcgcgaagcGCGCCAGGUCg -3' miRNA: 3'- -GGCaCUGCUuucUGGU--------CGCGGUCCAG- -5' |
|||||||
| 24325 | 3' | -55 | NC_005263.2 | + | 43438 | 0.73 | 0.317547 |
|
Target: 5'- uCC-UGACGAAAGACCcgcGCGCCGGccugcccGUCg -3' miRNA: 3'- -GGcACUGCUUUCUGGu--CGCGGUC-------CAG- -5' |
|||||||
| 24325 | 3' | -55 | NC_005263.2 | + | 8690 | 0.75 | 0.222302 |
|
Target: 5'- aCCGgucGACGAcAGGugCGGCGaCAGGUCg -3' miRNA: 3'- -GGCa--CUGCU-UUCugGUCGCgGUCCAG- -5' |
|||||||
| 24325 | 3' | -55 | NC_005263.2 | + | 4658 | 0.77 | 0.174482 |
|
Target: 5'- ---cGACGGGcAGGCCGGCGCgCGGGUCu -3' miRNA: 3'- ggcaCUGCUU-UCUGGUCGCG-GUCCAG- -5' |
|||||||
| 24325 | 3' | -55 | NC_005263.2 | + | 30814 | 0.82 | 0.076962 |
|
Target: 5'- gCCGUGGCGAcu-GCCucGCGCCAGGUCu -3' miRNA: 3'- -GGCACUGCUuucUGGu-CGCGGUCCAG- -5' |
|||||||
| 24325 | 3' | -55 | NC_005263.2 | + | 45112 | 1.12 | 0.000592 |
|
Target: 5'- gCCGUGACGAAAGACCAGCGCCAGGUCg -3' miRNA: 3'- -GGCACUGCUUUCUGGUCGCGGUCCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home