miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24325 5' -57.9 NC_005263.2 + 22195 0.66 0.524261
Target:  5'- cCGGugCUGGCg--UGGCc-CGG-GGCa -3'
miRNA:   3'- -GUCugGACCGagaACCGaaGCCgCCG- -5'
24325 5' -57.9 NC_005263.2 + 2625 0.66 0.49917
Target:  5'- aCAGGCCgaccgcgcGGUUCaucgcgcuugccGGCguaUCGGCGGCg -3'
miRNA:   3'- -GUCUGGa-------CCGAGaa----------CCGa--AGCCGCCG- -5'
24325 5' -57.9 NC_005263.2 + 39115 0.67 0.47261
Target:  5'- gGGACgUGGUggccGGCcagaucaacgUCGGCGGCa -3'
miRNA:   3'- gUCUGgACCGagaaCCGa---------AGCCGCCG- -5'
24325 5' -57.9 NC_005263.2 + 33995 0.67 0.452673
Target:  5'- gAGGCC-GGCcgUgUUGGCUgcgucgCGGCGcGCg -3'
miRNA:   3'- gUCUGGaCCG--AgAACCGAa-----GCCGC-CG- -5'
24325 5' -57.9 NC_005263.2 + 33667 0.67 0.442878
Target:  5'- gCGGAgUCgaugcgGGCgcgaaUCUUGGCgcagcgCGGCGGCa -3'
miRNA:   3'- -GUCU-GGa-----CCG-----AGAACCGaa----GCCGCCG- -5'
24325 5' -57.9 NC_005263.2 + 24535 0.67 0.442878
Target:  5'- uCGGGCaacGGCggcggCgcgGGCggCGGCGGCu -3'
miRNA:   3'- -GUCUGga-CCGa----Gaa-CCGaaGCCGCCG- -5'
24325 5' -57.9 NC_005263.2 + 9547 0.68 0.414229
Target:  5'- -cGACCgacgcgGcGCUCgcGGCUUgccaGGCGGCg -3'
miRNA:   3'- guCUGGa-----C-CGAGaaCCGAAg---CCGCCG- -5'
24325 5' -57.9 NC_005263.2 + 44051 0.68 0.414229
Target:  5'- uGGAUCUGGaaCacGGUgcugCGGCGGCa -3'
miRNA:   3'- gUCUGGACCgaGaaCCGaa--GCCGCCG- -5'
24325 5' -57.9 NC_005263.2 + 17730 0.68 0.414229
Target:  5'- --cGCCgcauggGGCUCgcacucGGCgcCGGCGGCa -3'
miRNA:   3'- gucUGGa-----CCGAGaa----CCGaaGCCGCCG- -5'
24325 5' -57.9 NC_005263.2 + 8080 0.68 0.408637
Target:  5'- aCAGGCCguauUGGUucgUCUUGcucagaucggacaucGCcgUCGGCGGCa -3'
miRNA:   3'- -GUCUGG----ACCG---AGAAC---------------CGa-AGCCGCCG- -5'
24325 5' -57.9 NC_005263.2 + 31995 0.68 0.395775
Target:  5'- cCGGACUgUGGCgggagUGGCacugUgGGCGGCg -3'
miRNA:   3'- -GUCUGG-ACCGaga--ACCGa---AgCCGCCG- -5'
24325 5' -57.9 NC_005263.2 + 24914 0.69 0.335515
Target:  5'- gCGGugCagggGGCUCUaacccguucggUGGCggCGGaCGGCg -3'
miRNA:   3'- -GUCugGa---CCGAGA-----------ACCGaaGCC-GCCG- -5'
24325 5' -57.9 NC_005263.2 + 15835 0.7 0.30421
Target:  5'- -cGACCUGGCgc---GCUUCGcGUGGCu -3'
miRNA:   3'- guCUGGACCGagaacCGAAGC-CGCCG- -5'
24325 5' -57.9 NC_005263.2 + 17288 0.71 0.254922
Target:  5'- gCAGACCUGGCgCgaGGCagucgccaCGGCGcGCg -3'
miRNA:   3'- -GUCUGGACCGaGaaCCGaa------GCCGC-CG- -5'
24325 5' -57.9 NC_005263.2 + 24992 0.72 0.242098
Target:  5'- -cGGCCUGGC-CgcaaccggguaUGGCUgCGGUGGCg -3'
miRNA:   3'- guCUGGACCGaGa----------ACCGAaGCCGCCG- -5'
24325 5' -57.9 NC_005263.2 + 14240 0.73 0.2014
Target:  5'- -cGACCcgUGGCgugCgggcUGGCUUgCGGCGGCc -3'
miRNA:   3'- guCUGG--ACCGa--Ga---ACCGAA-GCCGCCG- -5'
24325 5' -57.9 NC_005263.2 + 24760 0.77 0.110026
Target:  5'- uCGGGCCUGcuacugucGCUCacgGGCggcgUCGGCGGCu -3'
miRNA:   3'- -GUCUGGAC--------CGAGaa-CCGa---AGCCGCCG- -5'
24325 5' -57.9 NC_005263.2 + 45148 1.11 0.000279
Target:  5'- gCAGACCUGGCUCUUGGCUUCGGCGGCg -3'
miRNA:   3'- -GUCUGGACCGAGAACCGAAGCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.