miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 3' -55.2 NC_005263.2 + 24491 0.66 0.627888
Target:  5'- cCGGCUcgACCACggUGC-CGCCgaacGuCACg -3'
miRNA:   3'- aGUCGA--UGGUGuuGCGuGCGGa---C-GUG- -5'
24326 3' -55.2 NC_005263.2 + 5957 0.66 0.627888
Target:  5'- cCGGCaacUGgCGCAccucGCGaCACGCCUcGCGCg -3'
miRNA:   3'- aGUCG---AUgGUGU----UGC-GUGCGGA-CGUG- -5'
24326 3' -55.2 NC_005263.2 + 34364 0.66 0.62676
Target:  5'- cCGGCcugGCCGCcggcgguAACGC-CGCgaGCACg -3'
miRNA:   3'- aGUCGa--UGGUG-------UUGCGuGCGgaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 41660 0.66 0.62676
Target:  5'- uUCGGCgacugccUGCuCGCGAUGCACgaguuGCCcGCACa -3'
miRNA:   3'- -AGUCG-------AUG-GUGUUGCGUG-----CGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 29171 0.66 0.62112
Target:  5'- cCGGCgcgcucgagcgcucgUGCCGCGcggucacgcucgACGCAgGCCgGCGCg -3'
miRNA:   3'- aGUCG---------------AUGGUGU------------UGCGUgCGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 37600 0.66 0.62112
Target:  5'- cUCGGUg--CACAACGUGCGCuucgacggcaagcacCUGCGCg -3'
miRNA:   3'- -AGUCGaugGUGUUGCGUGCG---------------GACGUG- -5'
24326 3' -55.2 NC_005263.2 + 29824 0.66 0.617736
Target:  5'- gCAGC-GCgCACGACGagcgcaucgcccggaACGCCUGCGa -3'
miRNA:   3'- aGUCGaUG-GUGUUGCg--------------UGCGGACGUg -5'
24326 3' -55.2 NC_005263.2 + 14103 0.66 0.616609
Target:  5'- cCGGCUG-CGCGGCGguCGCCgucGCGa -3'
miRNA:   3'- aGUCGAUgGUGUUGCguGCGGa--CGUg -5'
24326 3' -55.2 NC_005263.2 + 37753 0.66 0.616609
Target:  5'- -uGGUUugCuCGAUGUcggcaagcugccGCGCCUGCGCg -3'
miRNA:   3'- agUCGAugGuGUUGCG------------UGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 17430 0.66 0.616609
Target:  5'- cCGGcCUGCC-C-GCGCAUGCaggaUGCACu -3'
miRNA:   3'- aGUC-GAUGGuGuUGCGUGCGg---ACGUG- -5'
24326 3' -55.2 NC_005263.2 + 10378 0.66 0.616609
Target:  5'- gUCAGCgucuCCcgAGCGCAUGaCCgGCACg -3'
miRNA:   3'- -AGUCGau--GGugUUGCGUGC-GGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 1412 0.66 0.616609
Target:  5'- --uGCUugUcguCGGCGCGCGCCgccuuggcUGCGCg -3'
miRNA:   3'- aguCGAugGu--GUUGCGUGCGG--------ACGUG- -5'
24326 3' -55.2 NC_005263.2 + 5463 0.66 0.616609
Target:  5'- aUCGGUUGCCACGucgGCGC-UGCUUcGUGCu -3'
miRNA:   3'- -AGUCGAUGGUGU---UGCGuGCGGA-CGUG- -5'
24326 3' -55.2 NC_005263.2 + 37710 0.66 0.616609
Target:  5'- gCGGUUACCGCuACGUGCcgGUCaUGCGCu -3'
miRNA:   3'- aGUCGAUGGUGuUGCGUG--CGG-ACGUG- -5'
24326 3' -55.2 NC_005263.2 + 30791 0.66 0.616609
Target:  5'- cCGGCgccggGCCGaauuCGCGCGCCgugGCGa -3'
miRNA:   3'- aGUCGa----UGGUguu-GCGUGCGGa--CGUg -5'
24326 3' -55.2 NC_005263.2 + 28359 0.67 0.605344
Target:  5'- -gAGC-GCCGCca-GCGCGCCaGCGCc -3'
miRNA:   3'- agUCGaUGGUGuugCGUGCGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 25261 0.67 0.605344
Target:  5'- gCAGC-ACCGauCAGCuGCAUGCCgauccGCGCg -3'
miRNA:   3'- aGUCGaUGGU--GUUG-CGUGCGGa----CGUG- -5'
24326 3' -55.2 NC_005263.2 + 28687 0.67 0.604219
Target:  5'- gCGGCacGCCGaacaccuCAACGCGCGCguugccguaCUGCGCg -3'
miRNA:   3'- aGUCGa-UGGU-------GUUGCGUGCG---------GACGUG- -5'
24326 3' -55.2 NC_005263.2 + 13214 0.67 0.594104
Target:  5'- --cGC-GCCA-GGCGUgaGCGCCUGCGCg -3'
miRNA:   3'- aguCGaUGGUgUUGCG--UGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 32492 0.67 0.594104
Target:  5'- uUCAGCgACgGCAguuccgACGCgauaaGCGCCaGCACg -3'
miRNA:   3'- -AGUCGaUGgUGU------UGCG-----UGCGGaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.