Results 81 - 88 of 88 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 24326 | 5' | -56.7 | NC_005263.2 | + | 6309 | 0.74 | 0.206769 |
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Target: 5'- cCGGCGCGcccgguuugcaAACGUGCCGAUacgcuacccacaaaCGCGAUa- -3' miRNA: 3'- -GCCGCGC-----------UUGCACGGCUA--------------GCGCUAga -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 9223 | 0.75 | 0.192509 |
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Target: 5'- aCGGCGCGcgguacguguccGACGUGUCGGUCGUccagagcuuGAUCUc -3' miRNA: 3'- -GCCGCGC------------UUGCACGGCUAGCG---------CUAGA- -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 31498 | 0.76 | 0.168371 |
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Target: 5'- gCGGCGCGAGC-UGCUGcUCGCGcgCg -3' miRNA: 3'- -GCCGCGCUUGcACGGCuAGCGCuaGa -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 38633 | 0.77 | 0.135362 |
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Target: 5'- cCGGCGCGAAUGaaGCCGcGUCGCGcAUCg -3' miRNA: 3'- -GCCGCGCUUGCa-CGGC-UAGCGC-UAGa -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 7022 | 0.77 | 0.151049 |
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Target: 5'- gCGGCGCGaAACGUGUCGAcgaUCGUGcgCg -3' miRNA: 3'- -GCCGCGC-UUGCACGGCU---AGCGCuaGa -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 22543 | 0.79 | 0.108399 |
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Target: 5'- gCGGCGCGGAC--GCCGAcgucgcgcUCGCGAUCa -3' miRNA: 3'- -GCCGCGCUUGcaCGGCU--------AGCGCUAGa -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 17102 | 0.8 | 0.091574 |
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Target: 5'- gGGCGCccGCGUGuuGAUCGUGGUCg -3' miRNA: 3'- gCCGCGcuUGCACggCUAGCGCUAGa -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 45470 | 1.08 | 0.000788 |
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Target: 5'- cCGGCGCGAACGUGCCGAUCGCGAUCUa -3' miRNA: 3'- -GCCGCGCUUGCACGGCUAGCGCUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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