miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 5' -56.7 NC_005263.2 + 28636 0.72 0.290779
Target:  5'- uCGGCGUGAGCacguccUGCCaGAUucgCGCGAUCUg -3'
miRNA:   3'- -GCCGCGCUUGc-----ACGG-CUA---GCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 29234 0.72 0.291502
Target:  5'- uCGGCGCGcAGCGgcgcGCCGAggcacgcguuguucaCGCGGUCg -3'
miRNA:   3'- -GCCGCGC-UUGCa---CGGCUa--------------GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 29578 0.71 0.328661
Target:  5'- gCGGCGCGAgccgcuuugaucGCGU-CC-AUCGCGAUCc -3'
miRNA:   3'- -GCCGCGCU------------UGCAcGGcUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 3751 0.71 0.336662
Target:  5'- -aGCGCGuACGUGCCGuacaaugucgacGUCGCGuUCUg -3'
miRNA:   3'- gcCGCGCuUGCACGGC------------UAGCGCuAGA- -5'
24326 5' -56.7 NC_005263.2 + 8286 0.71 0.361508
Target:  5'- -aGCGCGAGCGgcGUCGGUCG-GAUCg -3'
miRNA:   3'- gcCGCGCUUGCa-CGGCUAGCgCUAGa -5'
24326 5' -56.7 NC_005263.2 + 41496 0.71 0.344804
Target:  5'- -cGCGcCGAGCGcgccGCCGAaCGCGAUCg -3'
miRNA:   3'- gcCGC-GCUUGCa---CGGCUaGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 3311 0.71 0.353922
Target:  5'- gGGCGCGGccgcgcgguguucaACGUcugcgcgccgccggcGCCGcgCGCGGUCg -3'
miRNA:   3'- gCCGCGCU--------------UGCA---------------CGGCuaGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 37843 0.7 0.378767
Target:  5'- gCGGCGCGAuGCGaaGCgcAUCGCGAUCg -3'
miRNA:   3'- -GCCGCGCU-UGCa-CGgcUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 20996 0.7 0.387601
Target:  5'- -uGCGCGucGACGUGCCGGcguuUCagGCGAUCa -3'
miRNA:   3'- gcCGCGC--UUGCACGGCU----AG--CGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 6508 0.7 0.370069
Target:  5'- aCGGCGCGuugaaGCCGGUCGUGAg-- -3'
miRNA:   3'- -GCCGCGCuugcaCGGCUAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 26329 0.7 0.370069
Target:  5'- uCGGCGUGAAgGUcgguugcgggacGuuGGUCGUGGUCa -3'
miRNA:   3'- -GCCGCGCUUgCA------------CggCUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 20271 0.7 0.392069
Target:  5'- gCGGCGcCGAauucaacGCGUGCCGcgaaggugacgcCGCGAUCa -3'
miRNA:   3'- -GCCGC-GCU-------UGCACGGCua----------GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 33899 0.7 0.405672
Target:  5'- uGcGCGCGAACGgcacGCCG-UCGCGGa-- -3'
miRNA:   3'- gC-CGCGCUUGCa---CGGCuAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 10152 0.7 0.414903
Target:  5'- cCGGCGCGGcauCG-GCCGGUUGCGc--- -3'
miRNA:   3'- -GCCGCGCUu--GCaCGGCUAGCGCuaga -5'
24326 5' -56.7 NC_005263.2 + 14193 0.7 0.387601
Target:  5'- gGGCagcaagcguuccGCGAcgGCGUGCCGuUCGCGcgCa -3'
miRNA:   3'- gCCG------------CGCU--UGCACGGCuAGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 9768 0.7 0.39657
Target:  5'- cCGGuCGCc-GCGUGCaCGGUCGCGcgCg -3'
miRNA:   3'- -GCC-GCGcuUGCACG-GCUAGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 1583 0.7 0.39657
Target:  5'- aCGGCacGCuuGGACGUGCCGAgcagCGCGGc-- -3'
miRNA:   3'- -GCCG--CG--CUUGCACGGCUa---GCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 27317 0.69 0.45308
Target:  5'- aCGGCGCGAcccgACGcGCCGA---CGAUCa -3'
miRNA:   3'- -GCCGCGCU----UGCaCGGCUagcGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 6254 0.69 0.433748
Target:  5'- aGGCGCGGuCGUGCCG-UCGgGcagCUu -3'
miRNA:   3'- gCCGCGCUuGCACGGCuAGCgCua-GA- -5'
24326 5' -56.7 NC_005263.2 + 16583 0.69 0.46292
Target:  5'- cCGGCgGCGAcGCGUucGCCGGgcUCGCGcgCg -3'
miRNA:   3'- -GCCG-CGCU-UGCA--CGGCU--AGCGCuaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.