Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24326 | 5' | -56.7 | NC_005263.2 | + | 6254 | 0.69 | 0.433748 |
Target: 5'- aGGCGCGGuCGUGCCG-UCGgGcagCUu -3' miRNA: 3'- gCCGCGCUuGCACGGCuAGCgCua-GA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 25903 | 0.69 | 0.45015 |
Target: 5'- aCGGcCGCGAcguacguaacggucGCGuUGCCGGUCGuCGcAUCg -3' miRNA: 3'- -GCC-GCGCU--------------UGC-ACGGCUAGC-GC-UAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 27317 | 0.69 | 0.45308 |
Target: 5'- aCGGCGCGAcccgACGcGCCGA---CGAUCa -3' miRNA: 3'- -GCCGCGCU----UGCaCGGCUagcGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 16583 | 0.69 | 0.46292 |
Target: 5'- cCGGCgGCGAcGCGUucGCCGGgcUCGCGcgCg -3' miRNA: 3'- -GCCG-CGCU-UGCA--CGGCU--AGCGCuaGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 13623 | 0.69 | 0.46292 |
Target: 5'- gGGUGCGcGCG-GCCGAaCGCcuGAUCa -3' miRNA: 3'- gCCGCGCuUGCaCGGCUaGCG--CUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 46184 | 0.69 | 0.46292 |
Target: 5'- cCGGCGCGcuCGUGCaGAcgCGCGG-CUg -3' miRNA: 3'- -GCCGCGCuuGCACGgCUa-GCGCUaGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 11820 | 0.68 | 0.472871 |
Target: 5'- uCGcGCGCGAACGUGUCGAaguagCGCu---- -3' miRNA: 3'- -GC-CGCGCUUGCACGGCUa----GCGcuaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 4604 | 0.68 | 0.472871 |
Target: 5'- aCGGcCGCGccggcagcuucGAgGUGCCGuaauugagcgccAUCGCGAUCa -3' miRNA: 3'- -GCC-GCGC-----------UUgCACGGC------------UAGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 27967 | 0.68 | 0.482929 |
Target: 5'- cCGGCGCG-ACG-GCCGuaccGUCGCGcUUg -3' miRNA: 3'- -GCCGCGCuUGCaCGGC----UAGCGCuAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 44999 | 0.68 | 0.482929 |
Target: 5'- aGGCGCGcAugGcGCCGuggcUCGCGAa-- -3' miRNA: 3'- gCCGCGC-UugCaCGGCu---AGCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 33673 | 0.68 | 0.493089 |
Target: 5'- aGGCGCGcGCGcacGCCG-UCGCaugGGUCUg -3' miRNA: 3'- gCCGCGCuUGCa--CGGCuAGCG---CUAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 41686 | 0.68 | 0.493089 |
Target: 5'- gGGCGCGGACugcgGCCGuaCGCGggCa -3' miRNA: 3'- gCCGCGCUUGca--CGGCuaGCGCuaGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 24548 | 0.68 | 0.503346 |
Target: 5'- gCGGCGCGGGCGgcggcgGCUGcgCcaCGGUCg -3' miRNA: 3'- -GCCGCGCUUGCa-----CGGCuaGc-GCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 26209 | 0.68 | 0.503346 |
Target: 5'- -cGCGCGAuGCGgcgGCCGuUCGCGAa-- -3' miRNA: 3'- gcCGCGCU-UGCa--CGGCuAGCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 28081 | 0.68 | 0.503346 |
Target: 5'- gCGGCaCGAucccguguguugGCGcgGCCGAUCGCG-UCg -3' miRNA: 3'- -GCCGcGCU------------UGCa-CGGCUAGCGCuAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 45332 | 0.68 | 0.512656 |
Target: 5'- cCGGuCGCGAGguCGUgaugccgGUCGGUCGCGAcuUCUg -3' miRNA: 3'- -GCC-GCGCUU--GCA-------CGGCUAGCGCU--AGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 27376 | 0.68 | 0.513695 |
Target: 5'- gCGGCGCGGcgGCG-GCCGG-CGCGcugaccggcugcGUCa -3' miRNA: 3'- -GCCGCGCU--UGCaCGGCUaGCGC------------UAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 19085 | 0.68 | 0.524129 |
Target: 5'- uGGUGCGucuuGCaGggcugGCCGAugucgaauugcUCGCGAUCUg -3' miRNA: 3'- gCCGCGCu---UG-Ca----CGGCU-----------AGCGCUAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 10994 | 0.68 | 0.524129 |
Target: 5'- uGGCGCGAauGCGUGCgaaacccucCGucaugugUGCGAUCg -3' miRNA: 3'- gCCGCGCU--UGCACG---------GCua-----GCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 22361 | 0.68 | 0.524129 |
Target: 5'- gCGGCGgcaaGAaaGCGUGUCGAUCgGCGGcaUCg -3' miRNA: 3'- -GCCGCg---CU--UGCACGGCUAG-CGCU--AGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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