miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 5' -56.7 NC_005263.2 + 30646 0.67 0.534644
Target:  5'- cCGGCGUuGACGU--CGAaCGCGAUCUg -3'
miRNA:   3'- -GCCGCGcUUGCAcgGCUaGCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 30215 0.66 0.620793
Target:  5'- uCGGCGCGcc---GCCGGUCGacuGAUCg -3'
miRNA:   3'- -GCCGCGCuugcaCGGCUAGCg--CUAGa -5'
24326 5' -56.7 NC_005263.2 + 29590 0.73 0.269738
Target:  5'- gCGGUGUcGACGccGCCGAUCGCGAg-- -3'
miRNA:   3'- -GCCGCGcUUGCa-CGGCUAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 29578 0.71 0.328661
Target:  5'- gCGGCGCGAgccgcuuugaucGCGU-CC-AUCGCGAUCc -3'
miRNA:   3'- -GCCGCGCU------------UGCAcGGcUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 29234 0.72 0.291502
Target:  5'- uCGGCGCGcAGCGgcgcGCCGAggcacgcguuguucaCGCGGUCg -3'
miRNA:   3'- -GCCGCGC-UUGCa---CGGCUa--------------GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 29171 0.73 0.263003
Target:  5'- cCGGCGCGcucgagcgcuCGUGCCG--CGCGGUCa -3'
miRNA:   3'- -GCCGCGCuu--------GCACGGCuaGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 28636 0.72 0.290779
Target:  5'- uCGGCGUGAGCacguccUGCCaGAUucgCGCGAUCUg -3'
miRNA:   3'- -GCCGCGCUUGc-----ACGG-CUA---GCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 28088 0.66 0.620793
Target:  5'- gCGGUugauguaaGCGAucgACGUGUCGAUCGCa---- -3'
miRNA:   3'- -GCCG--------CGCU---UGCACGGCUAGCGcuaga -5'
24326 5' -56.7 NC_005263.2 + 28081 0.68 0.503346
Target:  5'- gCGGCaCGAucccguguguugGCGcgGCCGAUCGCG-UCg -3'
miRNA:   3'- -GCCGcGCU------------UGCa-CGGCUAGCGCuAGa -5'
24326 5' -56.7 NC_005263.2 + 28045 0.67 0.588178
Target:  5'- uCGGCuCGAGCGUGUgcugaaCGAccgcCGCGAUCc -3'
miRNA:   3'- -GCCGcGCUUGCACG------GCUa---GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 27967 0.68 0.482929
Target:  5'- cCGGCGCG-ACG-GCCGuaccGUCGCGcUUg -3'
miRNA:   3'- -GCCGCGCuUGCaCGGC----UAGCGCuAGa -5'
24326 5' -56.7 NC_005263.2 + 27960 0.72 0.313084
Target:  5'- aCGGCGCGGAUGgcccagagcUGCUGcgCGCGAg-- -3'
miRNA:   3'- -GCCGCGCUUGC---------ACGGCuaGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 27619 0.66 0.619703
Target:  5'- gCGGCGCGAcggucgaccacucAUG-GCCGAUCGaCGugacgaacGUCUc -3'
miRNA:   3'- -GCCGCGCU-------------UGCaCGGCUAGC-GC--------UAGA- -5'
24326 5' -56.7 NC_005263.2 + 27507 0.73 0.256404
Target:  5'- aCGGCGUucACGaaGCCGGUCGCGGUg- -3'
miRNA:   3'- -GCCGCGcuUGCa-CGGCUAGCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 27376 0.68 0.513695
Target:  5'- gCGGCGCGGcgGCG-GCCGG-CGCGcugaccggcugcGUCa -3'
miRNA:   3'- -GCCGCGCU--UGCaCGGCUaGCGC------------UAGa -5'
24326 5' -56.7 NC_005263.2 + 27317 0.69 0.45308
Target:  5'- aCGGCGCGAcccgACGcGCCGA---CGAUCa -3'
miRNA:   3'- -GCCGCGCU----UGCaCGGCUagcGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 27145 0.67 0.588178
Target:  5'- cCGGCuuucgugcccGCGAugGUGUCGuugaaCGUGGUCg -3'
miRNA:   3'- -GCCG----------CGCUugCACGGCua---GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 26329 0.7 0.370069
Target:  5'- uCGGCGUGAAgGUcgguugcgggacGuuGGUCGUGGUCa -3'
miRNA:   3'- -GCCGCGCUUgCA------------CggCUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 26209 0.68 0.503346
Target:  5'- -cGCGCGAuGCGgcgGCCGuUCGCGAa-- -3'
miRNA:   3'- gcCGCGCU-UGCa--CGGCuAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 25903 0.69 0.45015
Target:  5'- aCGGcCGCGAcguacguaacggucGCGuUGCCGGUCGuCGcAUCg -3'
miRNA:   3'- -GCC-GCGCU--------------UGC-ACGGCUAGC-GC-UAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.