Results 81 - 88 of 88 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24326 | 5' | -56.7 | NC_005263.2 | + | 6254 | 0.69 | 0.433748 |
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Target: 5'- aGGCGCGGuCGUGCCG-UCGgGcagCUu -3' miRNA: 3'- gCCGCGCUuGCACGGCuAGCgCua-GA- -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 6183 | 0.69 | 0.430889 |
|
Target: 5'- gCGGCGC--GCGUuucgcauucaggaaGCCGGUCGCGuugGUCUu -3' miRNA: 3'- -GCCGCGcuUGCA--------------CGGCUAGCGC---UAGA- -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 4604 | 0.68 | 0.472871 |
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Target: 5'- aCGGcCGCGccggcagcuucGAgGUGCCGuaauugagcgccAUCGCGAUCa -3' miRNA: 3'- -GCC-GCGC-----------UUgCACGGC------------UAGCGCUAGa -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 3751 | 0.71 | 0.336662 |
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Target: 5'- -aGCGCGuACGUGCCGuacaaugucgacGUCGCGuUCUg -3' miRNA: 3'- gcCGCGCuUGCACGGC------------UAGCGCuAGA- -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 3311 | 0.71 | 0.353922 |
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Target: 5'- gGGCGCGGccgcgcgguguucaACGUcugcgcgccgccggcGCCGcgCGCGGUCg -3' miRNA: 3'- gCCGCGCU--------------UGCA---------------CGGCuaGCGCUAGa -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 2759 | 0.69 | 0.424263 |
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Target: 5'- gCGGC-CGc-CGUGCCGGUCGUGuUCg -3' miRNA: 3'- -GCCGcGCuuGCACGGCUAGCGCuAGa -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 1583 | 0.7 | 0.39657 |
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Target: 5'- aCGGCacGCuuGGACGUGCCGAgcagCGCGGc-- -3' miRNA: 3'- -GCCG--CG--CUUGCACGGCUa---GCGCUaga -5' |
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| 24326 | 5' | -56.7 | NC_005263.2 | + | 696 | 0.67 | 0.534644 |
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Target: 5'- uGaGCGCGAuCGUGCCGccgccCGCGAg-- -3' miRNA: 3'- gC-CGCGCUuGCACGGCua---GCGCUaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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