miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 5' -56.7 NC_005263.2 + 9720 0.69 0.428042
Target:  5'- gCGGCGCGcuugcGCucguucgccacagcaGUGUCGAUCGCGGUg- -3'
miRNA:   3'- -GCCGCGCu----UG---------------CACGGCUAGCGCUAga -5'
24326 5' -56.7 NC_005263.2 + 24942 0.66 0.620793
Target:  5'- uGGCgGCGGACGgcggUGCgCGGUuCGCaGAUCg -3'
miRNA:   3'- gCCG-CGCUUGC----ACG-GCUA-GCG-CUAGa -5'
24326 5' -56.7 NC_005263.2 + 14193 0.7 0.387601
Target:  5'- gGGCagcaagcguuccGCGAcgGCGUGCCGuUCGCGcgCa -3'
miRNA:   3'- gCCG------------CGCU--UGCACGGCuAGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 27317 0.69 0.45308
Target:  5'- aCGGCGCGAcccgACGcGCCGA---CGAUCa -3'
miRNA:   3'- -GCCGCGCU----UGCaCGGCUagcGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 44896 0.66 0.625154
Target:  5'- uCGGgGCGGGCGgcgGCCGGgccggcucaccggccUCGUGcUCa -3'
miRNA:   3'- -GCCgCGCUUGCa--CGGCU---------------AGCGCuAGa -5'
24326 5' -56.7 NC_005263.2 + 15771 0.66 0.6426
Target:  5'- uCGGCGUGuucaacaaaguGCGUcGCCcGUCGuCGAUCg -3'
miRNA:   3'- -GCCGCGCu----------UGCA-CGGcUAGC-GCUAGa -5'
24326 5' -56.7 NC_005263.2 + 19678 0.67 0.566601
Target:  5'- cCGGUgaagcucaGCG-AUGUGCUGAaaGCGAUCUg -3'
miRNA:   3'- -GCCG--------CGCuUGCACGGCUagCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 37827 0.67 0.545232
Target:  5'- cCGGCGCucAUGUcGCCGAcgcggcguuUCGCGAa-- -3'
miRNA:   3'- -GCCGCGcuUGCA-CGGCU---------AGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 6254 0.69 0.433748
Target:  5'- aGGCGCGGuCGUGCCG-UCGgGcagCUu -3'
miRNA:   3'- gCCGCGCUuGCACGGCuAGCgCua-GA- -5'
24326 5' -56.7 NC_005263.2 + 9768 0.7 0.39657
Target:  5'- cCGGuCGCc-GCGUGCaCGGUCGCGcgCg -3'
miRNA:   3'- -GCC-GCGcuUGCACG-GCUAGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 1583 0.7 0.39657
Target:  5'- aCGGCacGCuuGGACGUGCCGAgcagCGCGGc-- -3'
miRNA:   3'- -GCCG--CG--CUUGCACGGCUa---GCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 20271 0.7 0.392069
Target:  5'- gCGGCGcCGAauucaacGCGUGCCGcgaaggugacgcCGCGAUCa -3'
miRNA:   3'- -GCCGC-GCU-------UGCACGGCua----------GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 16583 0.69 0.46292
Target:  5'- cCGGCgGCGAcGCGUucGCCGGgcUCGCGcgCg -3'
miRNA:   3'- -GCCG-CGCU-UGCA--CGGCU--AGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 33673 0.68 0.493089
Target:  5'- aGGCGCGcGCGcacGCCG-UCGCaugGGUCUg -3'
miRNA:   3'- gCCGCGCuUGCa--CGGCuAGCG---CUAGA- -5'
24326 5' -56.7 NC_005263.2 + 46184 0.69 0.46292
Target:  5'- cCGGCGCGcuCGUGCaGAcgCGCGG-CUg -3'
miRNA:   3'- -GCCGCGCuuGCACGgCUa-GCGCUaGA- -5'
24326 5' -56.7 NC_005263.2 + 16777 0.67 0.534644
Target:  5'- aCGGcCGCcGGCGUaucGCCGGaCGUGAUCg -3'
miRNA:   3'- -GCC-GCGcUUGCA---CGGCUaGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 30646 0.67 0.534644
Target:  5'- cCGGCGUuGACGU--CGAaCGCGAUCUg -3'
miRNA:   3'- -GCCGCGcUUGCAcgGCUaGCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 9223 0.75 0.192509
Target:  5'- aCGGCGCGcgguacguguccGACGUGUCGGUCGUccagagcuuGAUCUc -3'
miRNA:   3'- -GCCGCGC------------UUGCACGGCUAGCG---------CUAGA- -5'
24326 5' -56.7 NC_005263.2 + 7022 0.77 0.151049
Target:  5'- gCGGCGCGaAACGUGUCGAcgaUCGUGcgCg -3'
miRNA:   3'- -GCCGCGC-UUGCACGGCU---AGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 38633 0.77 0.135362
Target:  5'- cCGGCGCGAAUGaaGCCGcGUCGCGcAUCg -3'
miRNA:   3'- -GCCGCGCUUGCa-CGGC-UAGCGC-UAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.