Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24326 | 5' | -56.7 | NC_005263.2 | + | 27376 | 0.68 | 0.513695 |
Target: 5'- gCGGCGCGGcgGCG-GCCGG-CGCGcugaccggcugcGUCa -3' miRNA: 3'- -GCCGCGCU--UGCaCGGCUaGCGC------------UAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 22361 | 0.68 | 0.524129 |
Target: 5'- gCGGCGgcaaGAaaGCGUGUCGAUCgGCGGcaUCg -3' miRNA: 3'- -GCCGCg---CU--UGCACGGCUAG-CGCU--AGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 10994 | 0.68 | 0.524129 |
Target: 5'- uGGCGCGAauGCGUGCgaaacccucCGucaugugUGCGAUCg -3' miRNA: 3'- gCCGCGCU--UGCACG---------GCua-----GCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 19085 | 0.68 | 0.524129 |
Target: 5'- uGGUGCGucuuGCaGggcugGCCGAugucgaauugcUCGCGAUCUg -3' miRNA: 3'- gCCGCGCu---UG-Ca----CGGCU-----------AGCGCUAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 16777 | 0.67 | 0.534644 |
Target: 5'- aCGGcCGCcGGCGUaucGCCGGaCGUGAUCg -3' miRNA: 3'- -GCC-GCGcUUGCA---CGGCUaGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 30646 | 0.67 | 0.534644 |
Target: 5'- cCGGCGUuGACGU--CGAaCGCGAUCUg -3' miRNA: 3'- -GCCGCGcUUGCAcgGCUaGCGCUAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 37827 | 0.67 | 0.545232 |
Target: 5'- cCGGCGCucAUGUcGCCGAcgcggcguuUCGCGAa-- -3' miRNA: 3'- -GCCGCGcuUGCA-CGGCU---------AGCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 28636 | 0.72 | 0.290779 |
Target: 5'- uCGGCGUGAGCacguccUGCCaGAUucgCGCGAUCUg -3' miRNA: 3'- -GCCGCGCUUGc-----ACGG-CUA---GCGCUAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 29234 | 0.72 | 0.291502 |
Target: 5'- uCGGCGCGcAGCGgcgcGCCGAggcacgcguuguucaCGCGGUCg -3' miRNA: 3'- -GCCGCGC-UUGCa---CGGCUa--------------GCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 29578 | 0.71 | 0.328661 |
Target: 5'- gCGGCGCGAgccgcuuugaucGCGU-CC-AUCGCGAUCc -3' miRNA: 3'- -GCCGCGCU------------UGCAcGGcUAGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 3751 | 0.71 | 0.336662 |
Target: 5'- -aGCGCGuACGUGCCGuacaaugucgacGUCGCGuUCUg -3' miRNA: 3'- gcCGCGCuUGCACGGC------------UAGCGCuAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 26329 | 0.7 | 0.370069 |
Target: 5'- uCGGCGUGAAgGUcgguugcgggacGuuGGUCGUGGUCa -3' miRNA: 3'- -GCCGCGCUUgCA------------CggCUAGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 29171 | 0.73 | 0.263003 |
Target: 5'- cCGGCGCGcucgagcgcuCGUGCCG--CGCGGUCa -3' miRNA: 3'- -GCCGCGCuu--------GCACGGCuaGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 14103 | 0.73 | 0.263003 |
Target: 5'- cCGGCuGCGcGGCGgucGCCG-UCGCGAUCg -3' miRNA: 3'- -GCCG-CGC-UUGCa--CGGCuAGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 9231 | 0.74 | 0.225429 |
Target: 5'- uCGGCguucagcacgGCGAACGUGCCGAcCGUGAc-- -3' miRNA: 3'- -GCCG----------CGCUUGCACGGCUaGCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 20693 | 0.74 | 0.208409 |
Target: 5'- gCGGCGCGAAaccUGcGCCGGUCGUGAc-- -3' miRNA: 3'- -GCCGCGCUU---GCaCGGCUAGCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 6309 | 0.74 | 0.206769 |
Target: 5'- cCGGCGCGcccgguuugcaAACGUGCCGAUacgcuacccacaaaCGCGAUa- -3' miRNA: 3'- -GCCGCGC-----------UUGCACGGCUA--------------GCGCUAga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 31498 | 0.76 | 0.168371 |
Target: 5'- gCGGCGCGAGC-UGCUGcUCGCGcgCg -3' miRNA: 3'- -GCCGCGCUUGcACGGCuAGCGCuaGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 17102 | 0.8 | 0.091574 |
Target: 5'- gGGCGCccGCGUGuuGAUCGUGGUCg -3' miRNA: 3'- gCCGCGcuUGCACggCUAGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 25079 | 0.66 | 0.620793 |
Target: 5'- aCGGUGCGGcCGagauaGUCGGUCauaccGCGAUCUg -3' miRNA: 3'- -GCCGCGCUuGCa----CGGCUAG-----CGCUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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