Results 81 - 88 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24326 | 5' | -56.7 | NC_005263.2 | + | 2759 | 0.69 | 0.424263 |
|
Target: 5'- gCGGC-CGc-CGUGCCGGUCGUGuUCg -3' miRNA: 3'- -GCCGcGCuuGCACGGCUAGCGCuAGa -5' |
|||||||
| 24326 | 5' | -56.7 | NC_005263.2 | + | 10152 | 0.7 | 0.414903 |
|
Target: 5'- cCGGCGCGGcauCG-GCCGGUUGCGc--- -3' miRNA: 3'- -GCCGCGCUu--GCaCGGCUAGCGCuaga -5' |
|||||||
| 24326 | 5' | -56.7 | NC_005263.2 | + | 33899 | 0.7 | 0.405672 |
|
Target: 5'- uGcGCGCGAACGgcacGCCG-UCGCGGa-- -3' miRNA: 3'- gC-CGCGCUUGCa---CGGCuAGCGCUaga -5' |
|||||||
| 24326 | 5' | -56.7 | NC_005263.2 | + | 20996 | 0.7 | 0.387601 |
|
Target: 5'- -uGCGCGucGACGUGCCGGcguuUCagGCGAUCa -3' miRNA: 3'- gcCGCGC--UUGCACGGCU----AG--CGCUAGa -5' |
|||||||
| 24326 | 5' | -56.7 | NC_005263.2 | + | 37843 | 0.7 | 0.378767 |
|
Target: 5'- gCGGCGCGAuGCGaaGCgcAUCGCGAUCg -3' miRNA: 3'- -GCCGCGCU-UGCa-CGgcUAGCGCUAGa -5' |
|||||||
| 24326 | 5' | -56.7 | NC_005263.2 | + | 26329 | 0.7 | 0.370069 |
|
Target: 5'- uCGGCGUGAAgGUcgguugcgggacGuuGGUCGUGGUCa -3' miRNA: 3'- -GCCGCGCUUgCA------------CggCUAGCGCUAGa -5' |
|||||||
| 24326 | 5' | -56.7 | NC_005263.2 | + | 3751 | 0.71 | 0.336662 |
|
Target: 5'- -aGCGCGuACGUGCCGuacaaugucgacGUCGCGuUCUg -3' miRNA: 3'- gcCGCGCuUGCACGGC------------UAGCGCuAGA- -5' |
|||||||
| 24326 | 5' | -56.7 | NC_005263.2 | + | 45470 | 1.08 | 0.000788 |
|
Target: 5'- cCGGCGCGAACGUGCCGAUCGCGAUCUa -3' miRNA: 3'- -GCCGCGCUUGCACGGCUAGCGCUAGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home