Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24326 | 5' | -56.7 | NC_005263.2 | + | 38339 | 0.67 | 0.566601 |
Target: 5'- uCGGUGCGAugGaugcgaaGUCGGUgcgcacCGCGAUCg -3' miRNA: 3'- -GCCGCGCUugCa------CGGCUA------GCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 41483 | 0.67 | 0.555886 |
Target: 5'- uCGaCGCGGGCGagucgGCCG-UCGUGAUCc -3' miRNA: 3'- -GCcGCGCUUGCa----CGGCuAGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 6619 | 0.67 | 0.555886 |
Target: 5'- gCGGCGCGcucGGCGcgGUCGAgcagUCGCGcGUCg -3' miRNA: 3'- -GCCGCGC---UUGCa-CGGCU----AGCGC-UAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 37827 | 0.67 | 0.545232 |
Target: 5'- cCGGCGCucAUGUcGCCGAcgcggcguuUCGCGAa-- -3' miRNA: 3'- -GCCGCGcuUGCA-CGGCU---------AGCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 696 | 0.67 | 0.534644 |
Target: 5'- uGaGCGCGAuCGUGCCGccgccCGCGAg-- -3' miRNA: 3'- gC-CGCGCUuGCACGGCua---GCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 16777 | 0.67 | 0.534644 |
Target: 5'- aCGGcCGCcGGCGUaucGCCGGaCGUGAUCg -3' miRNA: 3'- -GCC-GCGcUUGCA---CGGCUaGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 30646 | 0.67 | 0.534644 |
Target: 5'- cCGGCGUuGACGU--CGAaCGCGAUCUg -3' miRNA: 3'- -GCCGCGcUUGCAcgGCUaGCGCUAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 46439 | 0.67 | 0.534644 |
Target: 5'- gCGGCGCGcuacaaaaAGC-UGCCGGUCGaccaguucaCGAUCa -3' miRNA: 3'- -GCCGCGC--------UUGcACGGCUAGC---------GCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 10994 | 0.68 | 0.524129 |
Target: 5'- uGGCGCGAauGCGUGCgaaacccucCGucaugugUGCGAUCg -3' miRNA: 3'- gCCGCGCU--UGCACG---------GCua-----GCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 22361 | 0.68 | 0.524129 |
Target: 5'- gCGGCGgcaaGAaaGCGUGUCGAUCgGCGGcaUCg -3' miRNA: 3'- -GCCGCg---CU--UGCACGGCUAG-CGCU--AGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 19085 | 0.68 | 0.524129 |
Target: 5'- uGGUGCGucuuGCaGggcugGCCGAugucgaauugcUCGCGAUCUg -3' miRNA: 3'- gCCGCGCu---UG-Ca----CGGCU-----------AGCGCUAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 27376 | 0.68 | 0.513695 |
Target: 5'- gCGGCGCGGcgGCG-GCCGG-CGCGcugaccggcugcGUCa -3' miRNA: 3'- -GCCGCGCU--UGCaCGGCUaGCGC------------UAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 45332 | 0.68 | 0.512656 |
Target: 5'- cCGGuCGCGAGguCGUgaugccgGUCGGUCGCGAcuUCUg -3' miRNA: 3'- -GCC-GCGCUU--GCA-------CGGCUAGCGCU--AGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 28081 | 0.68 | 0.503346 |
Target: 5'- gCGGCaCGAucccguguguugGCGcgGCCGAUCGCG-UCg -3' miRNA: 3'- -GCCGcGCU------------UGCa-CGGCUAGCGCuAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 24548 | 0.68 | 0.503346 |
Target: 5'- gCGGCGCGGGCGgcggcgGCUGcgCcaCGGUCg -3' miRNA: 3'- -GCCGCGCUUGCa-----CGGCuaGc-GCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 26209 | 0.68 | 0.503346 |
Target: 5'- -cGCGCGAuGCGgcgGCCGuUCGCGAa-- -3' miRNA: 3'- gcCGCGCU-UGCa--CGGCuAGCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 33673 | 0.68 | 0.493089 |
Target: 5'- aGGCGCGcGCGcacGCCG-UCGCaugGGUCUg -3' miRNA: 3'- gCCGCGCuUGCa--CGGCuAGCG---CUAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 41686 | 0.68 | 0.493089 |
Target: 5'- gGGCGCGGACugcgGCCGuaCGCGggCa -3' miRNA: 3'- gCCGCGCUUGca--CGGCuaGCGCuaGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 27967 | 0.68 | 0.482929 |
Target: 5'- cCGGCGCG-ACG-GCCGuaccGUCGCGcUUg -3' miRNA: 3'- -GCCGCGCuUGCaCGGC----UAGCGCuAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 44999 | 0.68 | 0.482929 |
Target: 5'- aGGCGCGcAugGcGCCGuggcUCGCGAa-- -3' miRNA: 3'- gCCGCGC-UugCaCGGCu---AGCGCUaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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