miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 3' -55.5 NC_005263.2 + 521 0.66 0.673851
Target:  5'- aCCGucuCCAAUgcaaagcGCCGcccGCaGGUGGCGCa -3'
miRNA:   3'- -GGCu--GGUUA-------UGGCu--UGaCCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 8883 0.67 0.668407
Target:  5'- cCCGugC--UGCCGGugcagcgcgcgcaauACUGGCGGCa-- -3'
miRNA:   3'- -GGCugGuuAUGGCU---------------UGACCGCCGcgc -5'
24327 3' -55.5 NC_005263.2 + 9768 0.67 0.665137
Target:  5'- aCCGACUucgcauccaucgcACCGAAC-GGgGGCGCc -3'
miRNA:   3'- -GGCUGGuua----------UGGCUUGaCCgCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 13334 0.67 0.665137
Target:  5'- gUCaGCCAAUugUGuuuaacuacacagauGCgGGCGGCGCGa -3'
miRNA:   3'- -GGcUGGUUAugGCu--------------UGaCCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 19370 0.67 0.664046
Target:  5'- aCCGgauGCgCAuUGCCGucagcCUcGGCGGCGCGc -3'
miRNA:   3'- -GGC---UG-GUuAUGGCuu---GA-CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 43017 0.67 0.653125
Target:  5'- cUCGugCAAgcacUGCgCGggUUGGCaccugacgcGGCGCGa -3'
miRNA:   3'- -GGCugGUU----AUG-GCuuGACCG---------CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 14679 0.67 0.653125
Target:  5'- gCCGACCGcUACgCGcGC--GCGGCGCu -3'
miRNA:   3'- -GGCUGGUuAUG-GCuUGacCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 32269 0.67 0.653125
Target:  5'- -aGGCCGugAUCGAAgUGGCgaacGGCGCa -3'
miRNA:   3'- ggCUGGUuaUGGCUUgACCG----CCGCGc -5'
24327 3' -55.5 NC_005263.2 + 30412 0.67 0.653125
Target:  5'- gCGACCG--GCUGcAGCaGGuCGGUGCGg -3'
miRNA:   3'- gGCUGGUuaUGGC-UUGaCC-GCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 15253 0.67 0.653125
Target:  5'- uCCGGCUAcAUGCUGcGGCUugucGCGGCGCu -3'
miRNA:   3'- -GGCUGGU-UAUGGC-UUGAc---CGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 15430 0.67 0.653125
Target:  5'- gCCGGCCGuacagGUACgGcGCgaGGCaGCGCGa -3'
miRNA:   3'- -GGCUGGU-----UAUGgCuUGa-CCGcCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 19164 0.67 0.646562
Target:  5'- uCCGACCGcauggGCCguggcgagcGAACUGaugggacggaucagcGCGGCGCa -3'
miRNA:   3'- -GGCUGGUua---UGG---------CUUGAC---------------CGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 3153 0.67 0.642184
Target:  5'- gUCGGCCAGcugGCCGGGCUGcaCGGaCGUa -3'
miRNA:   3'- -GGCUGGUUa--UGGCUUGACc-GCC-GCGc -5'
24327 3' -55.5 NC_005263.2 + 24995 0.67 0.631235
Target:  5'- cCUGGCCGcaACCGggUauggcugcggUGGCGGUggcuGCGg -3'
miRNA:   3'- -GGCUGGUuaUGGCuuG----------ACCGCCG----CGC- -5'
24327 3' -55.5 NC_005263.2 + 39283 0.67 0.631235
Target:  5'- uUGAUCGcacGCCGAGCggccGGCaGGCGCa -3'
miRNA:   3'- gGCUGGUua-UGGCUUGa---CCG-CCGCGc -5'
24327 3' -55.5 NC_005263.2 + 40697 0.67 0.631235
Target:  5'- gCGGCCGA---CGAACUGuuCGGCGCa -3'
miRNA:   3'- gGCUGGUUaugGCUUGACc-GCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 25692 0.67 0.631235
Target:  5'- cCCGGaCAcgGC-GAGCacGGCGGCGCGu -3'
miRNA:   3'- -GGCUgGUuaUGgCUUGa-CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 14422 0.67 0.631235
Target:  5'- uUCGACCAG-ACCcauGCgacGGCGuGCGCGc -3'
miRNA:   3'- -GGCUGGUUaUGGcu-UGa--CCGC-CGCGC- -5'
24327 3' -55.5 NC_005263.2 + 35711 0.67 0.624664
Target:  5'- gCCGGCCGgcaagGUcgaagacggcgagacGCCGGAagaaGCGGCGCGg -3'
miRNA:   3'- -GGCUGGU-----UA---------------UGGCUUgac-CGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 41338 0.67 0.620285
Target:  5'- uUCGACgAG-GCCGAGCUcGCccGGCGCGc -3'
miRNA:   3'- -GGCUGgUUaUGGCUUGAcCG--CCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.