Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24327 | 5' | -54.3 | NC_005263.2 | + | 20101 | 0.67 | 0.735559 |
Target: 5'- uCUGGUCGACCA----GCG-UCGCCGc -3' miRNA: 3'- cGGCCAGCUGGUcaagUGCuAGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 9247 | 0.67 | 0.735559 |
Target: 5'- uGUCGGUCGuCCAGagCuuGAUCucuuCCGu -3' miRNA: 3'- -CGGCCAGCuGGUCaaGugCUAGu---GGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 19790 | 0.67 | 0.703553 |
Target: 5'- cGgCGGcCGACCAGaUUCgcgccGCGAUCGCg- -3' miRNA: 3'- -CgGCCaGCUGGUC-AAG-----UGCUAGUGgc -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 4841 | 0.67 | 0.735559 |
Target: 5'- aGUCGGUUG-CCcGUaCGCGcgCGCCGu -3' miRNA: 3'- -CGGCCAGCuGGuCAaGUGCuaGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 35535 | 0.66 | 0.766628 |
Target: 5'- cGCCGG-CGAUCGGcagCACGuUCGCa- -3' miRNA: 3'- -CGGCCaGCUGGUCaa-GUGCuAGUGgc -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 21333 | 0.66 | 0.766628 |
Target: 5'- cGUCGGUCuGAU--GUUCGCGAgcgCGCUGa -3' miRNA: 3'- -CGGCCAG-CUGguCAAGUGCUa--GUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 26133 | 0.66 | 0.766628 |
Target: 5'- aGCgGGUCGAC--GUUgGCGAUCAaCUGc -3' miRNA: 3'- -CGgCCAGCUGguCAAgUGCUAGU-GGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 24399 | 0.66 | 0.776723 |
Target: 5'- gGuuGGUCuGugCGGUcaUguCGAUCGCCu -3' miRNA: 3'- -CggCCAG-CugGUCA--AguGCUAGUGGc -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 32298 | 0.66 | 0.776723 |
Target: 5'- aGCCGGUCuuGACgAGUgUCACG-UCgAUCGa -3' miRNA: 3'- -CGGCCAG--CUGgUCA-AGUGCuAG-UGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 15099 | 0.66 | 0.776723 |
Target: 5'- aCCGaGUCGuACCAGUUCuCGAgC-CCGu -3' miRNA: 3'- cGGC-CAGC-UGGUCAAGuGCUaGuGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 8404 | 0.66 | 0.786667 |
Target: 5'- cGCCGGcCauuuCCAGcUCGCGcUCGCCc -3' miRNA: 3'- -CGGCCaGcu--GGUCaAGUGCuAGUGGc -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 37240 | 0.66 | 0.766628 |
Target: 5'- cGCCGGU--GCCgAGUUCcgccGCGA-CGCCGu -3' miRNA: 3'- -CGGCCAgcUGG-UCAAG----UGCUaGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 6128 | 0.66 | 0.756395 |
Target: 5'- gGCCGGUaugUCGGUgCGCGAUCGCa- -3' miRNA: 3'- -CGGCCAgcuGGUCAaGUGCUAGUGgc -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 45331 | 0.66 | 0.746034 |
Target: 5'- cCCGGUCGcgaggucgugauGCCGGUcggUCGCGAcuUCugCu -3' miRNA: 3'- cGGCCAGC------------UGGUCA---AGUGCU--AGugGc -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 33114 | 0.66 | 0.746034 |
Target: 5'- aGCCGG-CGAgCAGaacgUCACgcgcaGAUCGCUGc -3' miRNA: 3'- -CGGCCaGCUgGUCa---AGUG-----CUAGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 2769 | 0.66 | 0.746034 |
Target: 5'- uGCCGGUCGugUucgUCACGA---CCGu -3' miRNA: 3'- -CGGCCAGCugGucaAGUGCUaguGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 30436 | 0.66 | 0.741857 |
Target: 5'- uGCUGGUCGACC-GUgccaaaaCGCGGgucgaugccguagCGCCGa -3' miRNA: 3'- -CGGCCAGCUGGuCAa------GUGCUa------------GUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 32396 | 0.66 | 0.756395 |
Target: 5'- cGCUGGUCGaACCGcccGUagUCgcuGCGAgcUCGCCGg -3' miRNA: 3'- -CGGCCAGC-UGGU---CA--AG---UGCU--AGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 19544 | 0.66 | 0.756395 |
Target: 5'- uGCCGuUCuAUCAGggCACGAUCGCa- -3' miRNA: 3'- -CGGCcAGcUGGUCaaGUGCUAGUGgc -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 26533 | 0.66 | 0.786667 |
Target: 5'- cGCCGG-CGGCgAGcaCGCGG-CGCUGg -3' miRNA: 3'- -CGGCCaGCUGgUCaaGUGCUaGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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