miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 5' -54.3 NC_005263.2 + 30224 0.69 0.561287
Target:  5'- cGCCGGUCGACUgaucGUUCGCGGcgaagcgugCGCgGu -3'
miRNA:   3'- -CGGCCAGCUGGu---CAAGUGCUa--------GUGgC- -5'
24327 5' -54.3 NC_005263.2 + 30436 0.66 0.741857
Target:  5'- uGCUGGUCGACC-GUgccaaaaCGCGGgucgaugccguagCGCCGa -3'
miRNA:   3'- -CGGCCAGCUGGuCAa------GUGCUa------------GUGGC- -5'
24327 5' -54.3 NC_005263.2 + 31599 0.71 0.487343
Target:  5'- uGCCGGUUGgucauGCCGG-UCGCGAcgGCCGc -3'
miRNA:   3'- -CGGCCAGC-----UGGUCaAGUGCUagUGGC- -5'
24327 5' -54.3 NC_005263.2 + 32298 0.66 0.776723
Target:  5'- aGCCGGUCuuGACgAGUgUCACG-UCgAUCGa -3'
miRNA:   3'- -CGGCCAG--CUGgUCA-AGUGCuAG-UGGC- -5'
24327 5' -54.3 NC_005263.2 + 32396 0.66 0.756395
Target:  5'- cGCUGGUCGaACCGcccGUagUCgcuGCGAgcUCGCCGg -3'
miRNA:   3'- -CGGCCAGC-UGGU---CA--AG---UGCU--AGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 33114 0.66 0.746034
Target:  5'- aGCCGG-CGAgCAGaacgUCACgcgcaGAUCGCUGc -3'
miRNA:   3'- -CGGCCaGCUgGUCa---AGUG-----CUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 35199 0.69 0.590684
Target:  5'- cGCCGuuuGUCGuCCAGUUCGuCGAaccugcagucugagUCGCCa -3'
miRNA:   3'- -CGGC---CAGCuGGUCAAGU-GCU--------------AGUGGc -5'
24327 5' -54.3 NC_005263.2 + 35535 0.66 0.766628
Target:  5'- cGCCGG-CGAUCGGcagCACGuUCGCa- -3'
miRNA:   3'- -CGGCCaGCUGGUCaa-GUGCuAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 36018 0.69 0.59397
Target:  5'- aCCGuGcucgCGAUCuGGUUCGCGGUCGCCu -3'
miRNA:   3'- cGGC-Ca---GCUGG-UCAAGUGCUAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 36348 0.69 0.583032
Target:  5'- cGCCcgaguGGUCG-CCAGgugUCGCG-UCGCCu -3'
miRNA:   3'- -CGG-----CCAGCuGGUCa--AGUGCuAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 37240 0.66 0.766628
Target:  5'- cGCCGGU--GCCgAGUUCcgccGCGA-CGCCGu -3'
miRNA:   3'- -CGGCCAgcUGG-UCAAG----UGCUaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 39094 0.69 0.60494
Target:  5'- aGCCGGaCGGCgAGUacgCGCGAcucgugCGCCGu -3'
miRNA:   3'- -CGGCCaGCUGgUCAa--GUGCUa-----GUGGC- -5'
24327 5' -54.3 NC_005263.2 + 39419 0.7 0.550496
Target:  5'- cGCCGcaccugucGUCGACCGGUUCGuCGGguaUC-CCGa -3'
miRNA:   3'- -CGGC--------CAGCUGGUCAAGU-GCU---AGuGGC- -5'
24327 5' -54.3 NC_005263.2 + 39686 0.72 0.447193
Target:  5'- uGCCGGacgCGAac--UUCACGGUCGCCGa -3'
miRNA:   3'- -CGGCCa--GCUggucAAGUGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 43513 0.72 0.437444
Target:  5'- uGCCGGcgCGGCC-GUUCauggaaaagACGAUUGCCGa -3'
miRNA:   3'- -CGGCCa-GCUGGuCAAG---------UGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 44183 0.7 0.518539
Target:  5'- uGCCGGUCGGCCugc-CGCcAUUGCCGc -3'
miRNA:   3'- -CGGCCAGCUGGucaaGUGcUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 44671 0.69 0.572135
Target:  5'- cGCaGGUCaACCAGgUCGCGAcggCGCCGc -3'
miRNA:   3'- -CGgCCAGcUGGUCaAGUGCUa--GUGGC- -5'
24327 5' -54.3 NC_005263.2 + 44892 0.67 0.714307
Target:  5'- cGCCcgaGGUCGGCCcgaucuGgcCGCGcUCGCCGa -3'
miRNA:   3'- -CGG---CCAGCUGGu-----CaaGUGCuAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 45331 0.66 0.746034
Target:  5'- cCCGGUCGcgaggucgugauGCCGGUcggUCGCGAcuUCugCu -3'
miRNA:   3'- cGGCCAGC------------UGGUCA---AGUGCU--AGugGc -5'
24327 5' -54.3 NC_005263.2 + 46458 1.11 0.000921
Target:  5'- uGCCGGUCGACCAGUUCACGAUCACCGa -3'
miRNA:   3'- -CGGCCAGCUGGUCAAGUGCUAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.