Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24327 | 5' | -54.3 | NC_005263.2 | + | 30436 | 0.66 | 0.741857 |
Target: 5'- uGCUGGUCGACC-GUgccaaaaCGCGGgucgaugccguagCGCCGa -3' miRNA: 3'- -CGGCCAGCUGGuCAa------GUGCUa------------GUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 30224 | 0.69 | 0.561287 |
Target: 5'- cGCCGGUCGACUgaucGUUCGCGGcgaagcgugCGCgGu -3' miRNA: 3'- -CGGCCAGCUGGu---CAAGUGCUa--------GUGgC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 26533 | 0.66 | 0.786667 |
Target: 5'- cGCCGG-CGGCgAGcaCGCGG-CGCUGg -3' miRNA: 3'- -CGGCCaGCUGgUCaaGUGCUaGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 26133 | 0.66 | 0.766628 |
Target: 5'- aGCgGGUCGAC--GUUgGCGAUCAaCUGc -3' miRNA: 3'- -CGgCCAGCUGguCAAgUGCUAGU-GGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 24716 | 0.72 | 0.447193 |
Target: 5'- uGCCGGgCGGCgCAGgcggCaauacgACGAUCACCGg -3' miRNA: 3'- -CGGCCaGCUG-GUCaa--G------UGCUAGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 24399 | 0.66 | 0.776723 |
Target: 5'- gGuuGGUCuGugCGGUcaUguCGAUCGCCu -3' miRNA: 3'- -CggCCAG-CugGUCA--AguGCUAGUGGc -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 23047 | 0.68 | 0.670918 |
Target: 5'- uGCCGGUCGACg---UCGgGAUCGUCGu -3' miRNA: 3'- -CGGCCAGCUGgucaAGUgCUAGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 22229 | 0.7 | 0.518539 |
Target: 5'- cGCCGGcgUCGGcCCGGUU-GCGA-CGCCGa -3' miRNA: 3'- -CGGCC--AGCU-GGUCAAgUGCUaGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 21876 | 0.72 | 0.408949 |
Target: 5'- gGCCGGcaagacgcuaUCGACCgAGUUgACGA-CGCCGc -3' miRNA: 3'- -CGGCC----------AGCUGG-UCAAgUGCUaGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 21333 | 0.66 | 0.766628 |
Target: 5'- cGUCGGUCuGAU--GUUCGCGAgcgCGCUGa -3' miRNA: 3'- -CGGCCAG-CUGguCAAGUGCUa--GUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 20941 | 0.68 | 0.626941 |
Target: 5'- -aCGcGcCGACCAcGUUCACGA-CACCa -3' miRNA: 3'- cgGC-CaGCUGGU-CAAGUGCUaGUGGc -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 20853 | 0.68 | 0.636853 |
Target: 5'- cCCGGagaccuaacgcuaUCGGCCGGcggCGCGAUCACg- -3' miRNA: 3'- cGGCC-------------AGCUGGUCaa-GUGCUAGUGgc -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 20708 | 0.7 | 0.54942 |
Target: 5'- cGCCGGUCGugacgcaGCCGG-UCA-GcgCGCCGg -3' miRNA: 3'- -CGGCCAGC-------UGGUCaAGUgCuaGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 20101 | 0.67 | 0.735559 |
Target: 5'- uCUGGUCGACCA----GCG-UCGCCGc -3' miRNA: 3'- cGGCCAGCUGGUcaagUGCuAGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 19808 | 0.68 | 0.675295 |
Target: 5'- uGCCGGUCGcacgGCCGGUacugcacaaggugagUCGCGcgCgAUCGa -3' miRNA: 3'- -CGGCCAGC----UGGUCA---------------AGUGCuaG-UGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 19790 | 0.67 | 0.703553 |
Target: 5'- cGgCGGcCGACCAGaUUCgcgccGCGAUCGCg- -3' miRNA: 3'- -CgGCCaGCUGGUC-AAG-----UGCUAGUGgc -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 19544 | 0.66 | 0.756395 |
Target: 5'- uGCCGuUCuAUCAGggCACGAUCGCa- -3' miRNA: 3'- -CGGCcAGcUGGUCaaGUGCUAGUGgc -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 19288 | 0.69 | 0.583032 |
Target: 5'- cGCCG--CGugCGcgUCACGGUCACCGu -3' miRNA: 3'- -CGGCcaGCugGUcaAGUGCUAGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 19112 | 0.78 | 0.187703 |
Target: 5'- uGCCGGUCGGCCGcgccgaGCGcAUCGCCGg -3' miRNA: 3'- -CGGCCAGCUGGUcaag--UGC-UAGUGGC- -5' |
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24327 | 5' | -54.3 | NC_005263.2 | + | 17710 | 0.66 | 0.786667 |
Target: 5'- aGCCGGUCGcGCUAuccgaaGCGAUCGCg- -3' miRNA: 3'- -CGGCCAGC-UGGUcaag--UGCUAGUGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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