miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 5' -54.3 NC_005263.2 + 20941 0.68 0.626941
Target:  5'- -aCGcGcCGACCAcGUUCACGA-CACCa -3'
miRNA:   3'- cgGC-CaGCUGGU-CAAGUGCUaGUGGc -5'
24327 5' -54.3 NC_005263.2 + 20853 0.68 0.636853
Target:  5'- cCCGGagaccuaacgcuaUCGGCCGGcggCGCGAUCACg- -3'
miRNA:   3'- cGGCC-------------AGCUGGUCaa-GUGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 3232 0.68 0.659953
Target:  5'- cUCGGgCGACgaCAGguaggCGCGAUCGCCGc -3'
miRNA:   3'- cGGCCaGCUG--GUCaa---GUGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 19790 0.67 0.703553
Target:  5'- cGgCGGcCGACCAGaUUCgcgccGCGAUCGCg- -3'
miRNA:   3'- -CgGCCaGCUGGUC-AAG-----UGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 9247 0.67 0.735559
Target:  5'- uGUCGGUCGuCCAGagCuuGAUCucuuCCGu -3'
miRNA:   3'- -CGGCCAGCuGGUCaaGugCUAGu---GGC- -5'
24327 5' -54.3 NC_005263.2 + 20101 0.67 0.735559
Target:  5'- uCUGGUCGACCA----GCG-UCGCCGc -3'
miRNA:   3'- cGGCCAGCUGGUcaagUGCuAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 19544 0.66 0.756395
Target:  5'- uGCCGuUCuAUCAGggCACGAUCGCa- -3'
miRNA:   3'- -CGGCcAGcUGGUCaaGUGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 32396 0.66 0.756395
Target:  5'- cGCUGGUCGaACCGcccGUagUCgcuGCGAgcUCGCCGg -3'
miRNA:   3'- -CGGCCAGC-UGGU---CA--AG---UGCU--AGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 17679 0.69 0.614833
Target:  5'- gGCaCGGUCGACCAGcaaaUCGacuuccuaaugucCGAUC-CCGa -3'
miRNA:   3'- -CG-GCCAGCUGGUCa---AGU-------------GCUAGuGGC- -5'
24327 5' -54.3 NC_005263.2 + 19288 0.69 0.583032
Target:  5'- cGCCG--CGugCGcgUCACGGUCACCGu -3'
miRNA:   3'- -CGGCcaGCugGUcaAGUGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 44671 0.69 0.572135
Target:  5'- cGCaGGUCaACCAGgUCGCGAcggCGCCGc -3'
miRNA:   3'- -CGgCCAGcUGGUCaAGUGCUa--GUGGC- -5'
24327 5' -54.3 NC_005263.2 + 9094 0.76 0.238276
Target:  5'- gGUCGaUCGGCCGGUUCACGAaCACgGg -3'
miRNA:   3'- -CGGCcAGCUGGUCAAGUGCUaGUGgC- -5'
24327 5' -54.3 NC_005263.2 + 9766 0.76 0.24455
Target:  5'- cGCCGGUCG-CCGcGUgCACGGUCGCgCGc -3'
miRNA:   3'- -CGGCCAGCuGGU-CAaGUGCUAGUG-GC- -5'
24327 5' -54.3 NC_005263.2 + 21876 0.72 0.408949
Target:  5'- gGCCGGcaagacgcuaUCGACCgAGUUgACGA-CGCCGc -3'
miRNA:   3'- -CGGCC----------AGCUGG-UCAAgUGCUaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 7222 0.72 0.427818
Target:  5'- cGCCGG-CGACCAGaagGCGcgCGCCu -3'
miRNA:   3'- -CGGCCaGCUGGUCaagUGCuaGUGGc -5'
24327 5' -54.3 NC_005263.2 + 43513 0.72 0.437444
Target:  5'- uGCCGGcgCGGCC-GUUCauggaaaagACGAUUGCCGa -3'
miRNA:   3'- -CGGCCa-GCUGGuCAAG---------UGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 24716 0.72 0.447193
Target:  5'- uGCCGGgCGGCgCAGgcggCaauacgACGAUCACCGg -3'
miRNA:   3'- -CGGCCaGCUG-GUCaa--G------UGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 877 0.7 0.518539
Target:  5'- uGCCGGcCGGCgCuucGUUCagcgcgGCGGUCGCCGc -3'
miRNA:   3'- -CGGCCaGCUG-Gu--CAAG------UGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 44183 0.7 0.518539
Target:  5'- uGCCGGUCGGCCugc-CGCcAUUGCCGc -3'
miRNA:   3'- -CGGCCAGCUGGucaaGUGcUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 39419 0.7 0.550496
Target:  5'- cGCCGcaccugucGUCGACCGGUUCGuCGGguaUC-CCGa -3'
miRNA:   3'- -CGGC--------CAGCUGGUCAAGU-GCU---AGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.