miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 5' -54.3 NC_005263.2 + 4841 0.67 0.735559
Target:  5'- aGUCGGUUG-CCcGUaCGCGcgCGCCGu -3'
miRNA:   3'- -CGGCCAGCuGGuCAaGUGCuaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 44892 0.67 0.714307
Target:  5'- cGCCcgaGGUCGGCCcgaucuGgcCGCGcUCGCCGa -3'
miRNA:   3'- -CGG---CCAGCUGGu-----CaaGUGCuAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 47325 0.67 0.703553
Target:  5'- uGCCGacGUCGACCcgcAGUcguacaUCGCGcugcgcGUCGCCGa -3'
miRNA:   3'- -CGGC--CAGCUGG---UCA------AGUGC------UAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 19790 0.67 0.703553
Target:  5'- cGgCGGcCGACCAGaUUCgcgccGCGAUCGCg- -3'
miRNA:   3'- -CgGCCaGCUGGUC-AAG-----UGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 19808 0.68 0.675295
Target:  5'- uGCCGGUCGcacgGCCGGUacugcacaaggugagUCGCGcgCgAUCGa -3'
miRNA:   3'- -CGGCCAGC----UGGUCA---------------AGUGCuaG-UGGC- -5'
24327 5' -54.3 NC_005263.2 + 23047 0.68 0.670918
Target:  5'- uGCCGGUCGACg---UCGgGAUCGUCGu -3'
miRNA:   3'- -CGGCCAGCUGgucaAGUgCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 3232 0.68 0.659953
Target:  5'- cUCGGgCGACgaCAGguaggCGCGAUCGCCGc -3'
miRNA:   3'- cGGCCaGCUG--GUCaa---GUGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 6630 0.68 0.637954
Target:  5'- gGCgCGGUCGAgCAGUcgcgCGuCGGUCGCUu -3'
miRNA:   3'- -CG-GCCAGCUgGUCAa---GU-GCUAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 20853 0.68 0.636853
Target:  5'- cCCGGagaccuaacgcuaUCGGCCGGcggCGCGAUCACg- -3'
miRNA:   3'- cGGCC-------------AGCUGGUCaa-GUGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 10150 0.68 0.636853
Target:  5'- aGCCGGcgcggcaUCGGCCGGUU-GCG--CACCGg -3'
miRNA:   3'- -CGGCC-------AGCUGGUCAAgUGCuaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 20941 0.68 0.626941
Target:  5'- -aCGcGcCGACCAcGUUCACGA-CACCa -3'
miRNA:   3'- cgGC-CaGCUGGU-CAAGUGCUaGUGGc -5'
24327 5' -54.3 NC_005263.2 + 47860 0.69 0.615934
Target:  5'- -aCGuGUCGACCcuacuugCACGAUCGCCu -3'
miRNA:   3'- cgGC-CAGCUGGucaa---GUGCUAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 17679 0.69 0.614833
Target:  5'- gGCaCGGUCGACCAGcaaaUCGacuuccuaaugucCGAUC-CCGa -3'
miRNA:   3'- -CG-GCCAGCUGGUCa---AGU-------------GCUAGuGGC- -5'
24327 5' -54.3 NC_005263.2 + 14081 0.69 0.60494
Target:  5'- cGCCGGcccaugUCGGCUGGUaCcggcugcgcgGCGGUCGCCGu -3'
miRNA:   3'- -CGGCC------AGCUGGUCAaG----------UGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 39094 0.69 0.60494
Target:  5'- aGCCGGaCGGCgAGUacgCGCGAcucgugCGCCGu -3'
miRNA:   3'- -CGGCCaGCUGgUCAa--GUGCUa-----GUGGC- -5'
24327 5' -54.3 NC_005263.2 + 36018 0.69 0.59397
Target:  5'- aCCGuGcucgCGAUCuGGUUCGCGGUCGCCu -3'
miRNA:   3'- cGGC-Ca---GCUGG-UCAAGUGCUAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 35199 0.69 0.590684
Target:  5'- cGCCGuuuGUCGuCCAGUUCGuCGAaccugcagucugagUCGCCa -3'
miRNA:   3'- -CGGC---CAGCuGGUCAAGU-GCU--------------AGUGGc -5'
24327 5' -54.3 NC_005263.2 + 36348 0.69 0.583032
Target:  5'- cGCCcgaguGGUCG-CCAGgugUCGCG-UCGCCu -3'
miRNA:   3'- -CGG-----CCAGCuGGUCa--AGUGCuAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 19288 0.69 0.583032
Target:  5'- cGCCG--CGugCGcgUCACGGUCACCGu -3'
miRNA:   3'- -CGGCcaGCugGUcaAGUGCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 44671 0.69 0.572135
Target:  5'- cGCaGGUCaACCAGgUCGCGAcggCGCCGc -3'
miRNA:   3'- -CGgCCAGcUGGUCaAGUGCUa--GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.