Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24328 | 3' | -53 | NC_005263.2 | + | 1538 | 0.68 | 0.70523 |
Target: 5'- uUGUGCCGUUcgAUGCCGagcacguucguguUGCGCAc-- -3' miRNA: 3'- cGCACGGCAGa-UAUGGC-------------ACGCGUugu -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 46968 | 0.68 | 0.695261 |
Target: 5'- cGCgGUGCaac----GCCGUGCGCAGCAc -3' miRNA: 3'- -CG-CACGgcagauaUGGCACGCGUUGU- -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 7963 | 0.68 | 0.695261 |
Target: 5'- aGCGUGCCaUC-AUGCCGccuUGcCGCAugGa -3' miRNA: 3'- -CGCACGGcAGaUAUGGC---AC-GCGUugU- -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 1578 | 0.68 | 0.695261 |
Target: 5'- aGCGUGCCGUCgAUACCcaUGCuGUAu-- -3' miRNA: 3'- -CGCACGGCAGaUAUGGc-ACG-CGUugu -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 11182 | 0.68 | 0.684124 |
Target: 5'- cGCGUGCCGUCcgGUauaGCCaauugGUG-GCAGCu -3' miRNA: 3'- -CGCACGGCAGa-UA---UGG-----CACgCGUUGu -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 8576 | 0.68 | 0.661705 |
Target: 5'- gGCGUGUCGUCcGUuacGCCGcGCGCuucCAu -3' miRNA: 3'- -CGCACGGCAGaUA---UGGCaCGCGuu-GU- -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 29782 | 0.69 | 0.653827 |
Target: 5'- aGCGUGCCGUCggcgucguagauuuCCG-GCGCGuauuGCGa -3' miRNA: 3'- -CGCACGGCAGauau----------GGCaCGCGU----UGU- -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 37933 | 0.69 | 0.639171 |
Target: 5'- gGCGcGCCGcCggcaGCCgGUGCGCAACc -3' miRNA: 3'- -CGCaCGGCaGaua-UGG-CACGCGUUGu -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 19291 | 0.69 | 0.605344 |
Target: 5'- cGCGUGCgCGUCacgGUcACCGUGaCGCGc-- -3' miRNA: 3'- -CGCACG-GCAGa--UA-UGGCAC-GCGUugu -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 14079 | 0.69 | 0.605344 |
Target: 5'- cGCGccgGCCcauGUCggcugGUACCGgcUGCGCGGCGg -3' miRNA: 3'- -CGCa--CGG---CAGa----UAUGGC--ACGCGUUGU- -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 17816 | 0.7 | 0.594104 |
Target: 5'- gGCG-GCCGaggAUGCCGcGCGCGGCc -3' miRNA: 3'- -CGCaCGGCagaUAUGGCaCGCGUUGu -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 14248 | 0.7 | 0.560622 |
Target: 5'- gGCGUGCgGgCUGgcuugcggcgGCCG-GCGCAACGc -3' miRNA: 3'- -CGCACGgCaGAUa---------UGGCaCGCGUUGU- -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 40611 | 0.7 | 0.560622 |
Target: 5'- ---cGCCGUCa--GCgGUGCGCGGCAc -3' miRNA: 3'- cgcaCGGCAGauaUGgCACGCGUUGU- -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 800 | 0.7 | 0.549571 |
Target: 5'- aGCGUGCCGgcc--GCCG-GCGCAGg- -3' miRNA: 3'- -CGCACGGCagauaUGGCaCGCGUUgu -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 14214 | 0.7 | 0.549571 |
Target: 5'- gGCGUGCCGU-----UCGcGCGCAACGa -3' miRNA: 3'- -CGCACGGCAgauauGGCaCGCGUUGU- -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 42622 | 0.71 | 0.527681 |
Target: 5'- uGCGauucagGUCGUCUAcGCCGaagcgaaguggcUGCGCAACGa -3' miRNA: 3'- -CGCa-----CGGCAGAUaUGGC------------ACGCGUUGU- -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 10550 | 0.71 | 0.527681 |
Target: 5'- cGCGgGuuGUCg--GCCGUcuGCGCGACGu -3' miRNA: 3'- -CGCaCggCAGauaUGGCA--CGCGUUGU- -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 31994 | 0.71 | 0.516857 |
Target: 5'- -aGUGCCGUCUcggcUGCCGUagcuGCGCGGg- -3' miRNA: 3'- cgCACGGCAGAu---AUGGCA----CGCGUUgu -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 17379 | 0.71 | 0.495486 |
Target: 5'- cGCGUgaaGCUGUCU--GCCG-GCGCGGCc -3' miRNA: 3'- -CGCA---CGGCAGAuaUGGCaCGCGUUGu -5' |
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24328 | 3' | -53 | NC_005263.2 | + | 23544 | 0.73 | 0.414504 |
Target: 5'- gGCGUGCCG-----ACCGUGgCGCAGCc -3' miRNA: 3'- -CGCACGGCagauaUGGCAC-GCGUUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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