miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24328 5' -54.8 NC_005263.2 + 29566 0.67 0.635716
Target:  5'- gUUGGC-UCcuacGCGGCGCGAGCcGCUu -3'
miRNA:   3'- gAGCCGuAGcu--UGCCGUGUUCGaCGA- -5'
24328 5' -54.8 NC_005263.2 + 34007 0.67 0.635716
Target:  5'- gUUGGCugCGucGCGGCGCGcgauccagAGCUGCUg -3'
miRNA:   3'- gAGCCGuaGCu-UGCCGUGU--------UCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 25078 0.67 0.635716
Target:  5'- -cCGGCAauUCGggUGGCGCuGGCacGCc -3'
miRNA:   3'- gaGCCGU--AGCuuGCCGUGuUCGa-CGa -5'
24328 5' -54.8 NC_005263.2 + 19480 0.67 0.635716
Target:  5'- -aCGGCGcUCGAGCaGUACGGGUUGg- -3'
miRNA:   3'- gaGCCGU-AGCUUGcCGUGUUCGACga -5'
24328 5' -54.8 NC_005263.2 + 1696 0.67 0.635716
Target:  5'- uUCGGUAUUGGuCGGUugGGGCaUGUc -3'
miRNA:   3'- gAGCCGUAGCUuGCCGugUUCG-ACGa -5'
24328 5' -54.8 NC_005263.2 + 33408 0.67 0.632341
Target:  5'- aUCGGCGUCGAucgccuugagcgccGCGcGCGCGuAGCggucgGCc -3'
miRNA:   3'- gAGCCGUAGCU--------------UGC-CGUGU-UCGa----CGa -5'
24328 5' -54.8 NC_005263.2 + 38797 0.67 0.624466
Target:  5'- -gCGGCcaCGAGCGGCAUcgcuGAGCUuGCc -3'
miRNA:   3'- gaGCCGuaGCUUGCCGUG----UUCGA-CGa -5'
24328 5' -54.8 NC_005263.2 + 46534 0.67 0.624466
Target:  5'- aUgGGUAUCG-ACGGCACGcugucGGCcgGCUu -3'
miRNA:   3'- gAgCCGUAGCuUGCCGUGU-----UCGa-CGA- -5'
24328 5' -54.8 NC_005263.2 + 29790 0.67 0.624466
Target:  5'- gUCGGCGUCGuagauuucCGGCGCGuauuGCgaUGCa -3'
miRNA:   3'- gAGCCGUAGCuu------GCCGUGUu---CG--ACGa -5'
24328 5' -54.8 NC_005263.2 + 9455 0.67 0.624466
Target:  5'- --gGGCAccaCGGgcaGCGGCGCGcccGGCUGCa -3'
miRNA:   3'- gagCCGUa--GCU---UGCCGUGU---UCGACGa -5'
24328 5' -54.8 NC_005263.2 + 38509 0.67 0.613222
Target:  5'- aUCGGCGUCG-ACGuGuCGCAGGUcGCc -3'
miRNA:   3'- gAGCCGUAGCuUGC-C-GUGUUCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 24365 0.67 0.613222
Target:  5'- uUCuGCG-CGAACGGCACGAGgaauuUUGCg -3'
miRNA:   3'- gAGcCGUaGCUUGCCGUGUUC-----GACGa -5'
24328 5' -54.8 NC_005263.2 + 45412 0.67 0.601997
Target:  5'- aCUCGGUcuGUCGGccgccgcCGGCGCGacacugcaGGCUGCc -3'
miRNA:   3'- -GAGCCG--UAGCUu------GCCGUGU--------UCGACGa -5'
24328 5' -54.8 NC_005263.2 + 14083 0.67 0.590797
Target:  5'- -cCGGCccauGUCGGcUGGUACcGGCUGCg -3'
miRNA:   3'- gaGCCG----UAGCUuGCCGUGuUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 24897 0.67 0.590797
Target:  5'- --aGGCGUCGGugcaagcgGCGGUGCAGGggGCUc -3'
miRNA:   3'- gagCCGUAGCU--------UGCCGUGUUCgaCGA- -5'
24328 5' -54.8 NC_005263.2 + 44154 0.67 0.590797
Target:  5'- gCUCGGCuAUCugcaGAACGGCGcCAAcCUGCc -3'
miRNA:   3'- -GAGCCG-UAG----CUUGCCGU-GUUcGACGa -5'
24328 5' -54.8 NC_005263.2 + 22899 0.68 0.568518
Target:  5'- -aCGGCGUucgugcCGGACGGaggugccCAAGCUGCg -3'
miRNA:   3'- gaGCCGUA------GCUUGCCgu-----GUUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 24577 0.68 0.557454
Target:  5'- gUCGGCAcgcCGAAUaucaugucgGGCGCAGGCggugGCg -3'
miRNA:   3'- gAGCCGUa--GCUUG---------CCGUGUUCGa---CGa -5'
24328 5' -54.8 NC_005263.2 + 24785 0.68 0.557454
Target:  5'- -gCGGCGUCG-GCGGCucgcCGGGCgucgGCg -3'
miRNA:   3'- gaGCCGUAGCuUGCCGu---GUUCGa---CGa -5'
24328 5' -54.8 NC_005263.2 + 33047 0.68 0.557454
Target:  5'- cCUCGGU--CGAcagcACGGUuuCGAGCUGCa -3'
miRNA:   3'- -GAGCCGuaGCU----UGCCGu-GUUCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.