miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24329 3' -57.7 NC_005263.2 + 37812 0.66 0.547449
Target:  5'- aCG-ACGggCGCGCauccgGCGCucauGUCGCCGAc -3'
miRNA:   3'- -GCaUGUa-GCGCGa----CGCG----CAGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 12177 0.66 0.547449
Target:  5'- aCGUAUAaCG-GCacGCGCGUCGCCa-- -3'
miRNA:   3'- -GCAUGUaGCgCGa-CGCGCAGCGGcuu -5'
24329 3' -57.7 NC_005263.2 + 37917 0.66 0.558192
Target:  5'- aCGaACAgCGgGCgcagGCGCGcCGCCGGc -3'
miRNA:   3'- -GCaUGUaGCgCGa---CGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 45603 0.67 0.494862
Target:  5'- uGUACGUCGCGCccgaucucgagGCaGCGUCGaucgucaCGAAc -3'
miRNA:   3'- gCAUGUAGCGCGa----------CG-CGCAGCg------GCUU- -5'
24329 3' -57.7 NC_005263.2 + 10139 0.67 0.492804
Target:  5'- aCGUGCAcuucccacgaggCGgGCaGCuugGCGUCGCCGAGa -3'
miRNA:   3'- -GCAUGUa-----------GCgCGaCG---CGCAGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 41184 0.7 0.313335
Target:  5'- uCGaUACGUugCGCGCUGUGCGUC-CUGAu -3'
miRNA:   3'- -GC-AUGUA--GCGCGACGCGCAGcGGCUu -5'
24329 3' -57.7 NC_005263.2 + 29018 0.69 0.345304
Target:  5'- aGUGCGUUGCGCacCGCGaCGCCGu- -3'
miRNA:   3'- gCAUGUAGCGCGacGCGCaGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 34807 0.69 0.345304
Target:  5'- cCGUACAUCGacaacugGCUGCGCacgCGCCa-- -3'
miRNA:   3'- -GCAUGUAGCg------CGACGCGca-GCGGcuu -5'
24329 3' -57.7 NC_005263.2 + 8737 0.68 0.406682
Target:  5'- gGUGCGUCGUaGaaGCGCGcCGCCGc- -3'
miRNA:   3'- gCAUGUAGCG-CgaCGCGCaGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 18869 0.68 0.406682
Target:  5'- gCGUGCcucggCGCGCcGCuGCG-CGCCGAc -3'
miRNA:   3'- -GCAUGua---GCGCGaCG-CGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 4208 0.68 0.425434
Target:  5'- aGUACG-CGCGCgucGaCGgGUCGUCGAGg -3'
miRNA:   3'- gCAUGUaGCGCGa--C-GCgCAGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 6357 0.67 0.454503
Target:  5'- uCGUugAUCGCGCcGUGCcgcccgaaGUUGCCGc- -3'
miRNA:   3'- -GCAugUAGCGCGaCGCG--------CAGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 18775 0.67 0.464429
Target:  5'- gGUGC-UCGCGCUGguuauCGUGcUCGCCGc- -3'
miRNA:   3'- gCAUGuAGCGCGAC-----GCGC-AGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 6737 0.67 0.472451
Target:  5'- aCGUACAcacUCGCGCgucacguccauCGCG-CGCCGGg -3'
miRNA:   3'- -GCAUGU---AGCGCGac---------GCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 15600 0.67 0.474468
Target:  5'- aCGUGCuggcgcuuAUCGCGUcggaacUGC-CGUCGCUGAAu -3'
miRNA:   3'- -GCAUG--------UAGCGCG------ACGcGCAGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 45311 0.67 0.474468
Target:  5'- gCGUAUGaCGCGCUGCGCaaucgcuucacgGUCGUgaCGAAc -3'
miRNA:   3'- -GCAUGUaGCGCGACGCG------------CAGCG--GCUU- -5'
24329 3' -57.7 NC_005263.2 + 17843 0.67 0.484613
Target:  5'- ----gAUUGCGCaGCGCuUCGCCGAc -3'
miRNA:   3'- gcaugUAGCGCGaCGCGcAGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 27265 0.66 0.558192
Target:  5'- --cGCGUCGaauuggccCGaCUGCGCGagGCCGAGc -3'
miRNA:   3'- gcaUGUAGC--------GC-GACGCGCagCGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.