Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24329 | 3' | -57.7 | NC_005263.2 | + | 12177 | 0.66 | 0.547449 |
Target: 5'- aCGUAUAaCG-GCacGCGCGUCGCCa-- -3' miRNA: 3'- -GCAUGUaGCgCGa-CGCGCAGCGGcuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 37812 | 0.66 | 0.547449 |
Target: 5'- aCG-ACGggCGCGCauccgGCGCucauGUCGCCGAc -3' miRNA: 3'- -GCaUGUa-GCGCGa----CGCG----CAGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 19061 | 0.66 | 0.547449 |
Target: 5'- aCGcGCcgCGCGgcCUGCGCG-CGCUGGu -3' miRNA: 3'- -GCaUGuaGCGC--GACGCGCaGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 30673 | 0.66 | 0.547449 |
Target: 5'- aGUGCAUCcUGCaUGCGCGggcagGCCGGc -3' miRNA: 3'- gCAUGUAGcGCG-ACGCGCag---CGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 31254 | 0.66 | 0.536772 |
Target: 5'- ------cCGCGCgGCGCGgCGCCGGg -3' miRNA: 3'- gcauguaGCGCGaCGCGCaGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 3174 | 0.66 | 0.536772 |
Target: 5'- uCGUGg--CGCggaauaacugccGCUGCGCGUCGgCGAGc -3' miRNA: 3'- -GCAUguaGCG------------CGACGCGCAGCgGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 41487 | 0.66 | 0.536772 |
Target: 5'- -cUGCucgacCGCGCcgaGCGCGcCGCCGAAc -3' miRNA: 3'- gcAUGua---GCGCGa--CGCGCaGCGGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 45603 | 0.67 | 0.494862 |
Target: 5'- uGUACGUCGCGCccgaucucgagGCaGCGUCGaucgucaCGAAc -3' miRNA: 3'- gCAUGUAGCGCGa----------CG-CGCAGCg------GCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 32550 | 0.66 | 0.505207 |
Target: 5'- --gGCGUUcaGCGC-GCGCGUcugCGCCGAGa -3' miRNA: 3'- gcaUGUAG--CGCGaCGCGCA---GCGGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 27128 | 0.66 | 0.515645 |
Target: 5'- aCGcGCAggCGCGCaGcCGCGUCGgCGAu -3' miRNA: 3'- -GCaUGUa-GCGCGaC-GCGCAGCgGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 6054 | 0.66 | 0.526169 |
Target: 5'- uCGUugGcggCGCGCUucaCGCG-CGCCGAc -3' miRNA: 3'- -GCAugUa--GCGCGAc--GCGCaGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 3313 | 0.66 | 0.536772 |
Target: 5'- gCGcgGCcgCGCGguguucaacguCUGCGCGcCGCCGGc -3' miRNA: 3'- -GCa-UGuaGCGC-----------GACGCGCaGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 10650 | 0.66 | 0.536772 |
Target: 5'- aGUACAcauggacgcCGCGCagaccGCGCG-CGCCGAc -3' miRNA: 3'- gCAUGUa--------GCGCGa----CGCGCaGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 45386 | 0.7 | 0.313335 |
Target: 5'- uCGUACGUgaugcacgCGCGCUGCGCaugcaccUGCCGAGc -3' miRNA: 3'- -GCAUGUA--------GCGCGACGCGca-----GCGGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 19163 | 0.7 | 0.298211 |
Target: 5'- cCGUGCAUC-CGCcgGCGCGgcUCGUCGGc -3' miRNA: 3'- -GCAUGUAGcGCGa-CGCGC--AGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 28709 | 0.72 | 0.243379 |
Target: 5'- gCGcGCGUUGCcguaCUGCGCGcCGCCGAGg -3' miRNA: 3'- -GCaUGUAGCGc---GACGCGCaGCGGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 37407 | 0.74 | 0.18641 |
Target: 5'- aCGUGCAUCGCGUcGCGCGgccguccUCGUCGu- -3' miRNA: 3'- -GCAUGUAGCGCGaCGCGC-------AGCGGCuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 3555 | 0.74 | 0.172371 |
Target: 5'- aGUGC--CGCGCaGCGCGUCGgCCGAc -3' miRNA: 3'- gCAUGuaGCGCGaCGCGCAGC-GGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 6443 | 0.75 | 0.150374 |
Target: 5'- uCGUGCAUCGCGa-GCagGCaGUCGCCGAAc -3' miRNA: 3'- -GCAUGUAGCGCgaCG--CG-CAGCGGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 2253 | 0.66 | 0.545308 |
Target: 5'- uGUACGUguaguuguucgaGCGCaGCGCGuUCGCCGu- -3' miRNA: 3'- gCAUGUAg-----------CGCGaCGCGC-AGCGGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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