Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24329 | 3' | -57.7 | NC_005263.2 | + | 46678 | 0.66 | 0.503131 |
Target: 5'- --aGCcUCGCGCgcagccaaggcgGCGCG-CGCCGAc -3' miRNA: 3'- gcaUGuAGCGCGa-----------CGCGCaGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 45603 | 0.67 | 0.494862 |
Target: 5'- uGUACGUCGCGCccgaucucgagGCaGCGUCGaucgucaCGAAc -3' miRNA: 3'- gCAUGUAGCGCGa----------CG-CGCAGCg------GCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 10139 | 0.67 | 0.492804 |
Target: 5'- aCGUGCAcuucccacgaggCGgGCaGCuugGCGUCGCCGAGa -3' miRNA: 3'- -GCAUGUa-----------GCgCGaCG---CGCAGCGGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 6369 | 0.67 | 0.484613 |
Target: 5'- gCGUAuccCAUCG-GUUGCGCGUCguGCCGu- -3' miRNA: 3'- -GCAU---GUAGCgCGACGCGCAG--CGGCuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 17843 | 0.67 | 0.484613 |
Target: 5'- ----gAUUGCGCaGCGCuUCGCCGAc -3' miRNA: 3'- gcaugUAGCGCGaCGCGcAGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 21387 | 0.67 | 0.484613 |
Target: 5'- gGUGCGcuUCGCGCUGCcGCag-GCCGGc -3' miRNA: 3'- gCAUGU--AGCGCGACG-CGcagCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 45311 | 0.67 | 0.474468 |
Target: 5'- gCGUAUGaCGCGCUGCGCaaucgcuucacgGUCGUgaCGAAc -3' miRNA: 3'- -GCAUGUaGCGCGACGCG------------CAGCG--GCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 15600 | 0.67 | 0.474468 |
Target: 5'- aCGUGCuggcgcuuAUCGCGUcggaacUGC-CGUCGCUGAAu -3' miRNA: 3'- -GCAUG--------UAGCGCG------ACGcGCAGCGGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 6737 | 0.67 | 0.472451 |
Target: 5'- aCGUACAcacUCGCGCgucacguccauCGCG-CGCCGGg -3' miRNA: 3'- -GCAUGU---AGCGCGac---------GCGCaGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 18775 | 0.67 | 0.464429 |
Target: 5'- gGUGC-UCGCGCUGguuauCGUGcUCGCCGc- -3' miRNA: 3'- gCAUGuAGCGCGAC-----GCGC-AGCGGCuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 6357 | 0.67 | 0.454503 |
Target: 5'- uCGUugAUCGCGCcGUGCcgcccgaaGUUGCCGc- -3' miRNA: 3'- -GCAugUAGCGCGaCGCG--------CAGCGGCuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 9825 | 0.67 | 0.453516 |
Target: 5'- gCGUGCAUCacguugacgaacgGCGCgGCGCGcUUGCuCGAc -3' miRNA: 3'- -GCAUGUAG-------------CGCGaCGCGC-AGCG-GCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 38017 | 0.67 | 0.444692 |
Target: 5'- gCGaACAUucucgaCGCGCUGCccGCGUCGCuCGGc -3' miRNA: 3'- -GCaUGUA------GCGCGACG--CGCAGCG-GCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 20982 | 0.67 | 0.444692 |
Target: 5'- --cGCGgcugCGCGcCUGCGCGUCgacguGCCGGc -3' miRNA: 3'- gcaUGUa---GCGC-GACGCGCAG-----CGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 26472 | 0.68 | 0.435002 |
Target: 5'- aGUGcCAUa-CGCcGCGCGUCGCCGc- -3' miRNA: 3'- gCAU-GUAgcGCGaCGCGCAGCGGCuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 4208 | 0.68 | 0.425434 |
Target: 5'- aGUACG-CGCGCgucGaCGgGUCGUCGAGg -3' miRNA: 3'- gCAUGUaGCGCGa--C-GCgCAGCGGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 25553 | 0.68 | 0.415994 |
Target: 5'- aGUugAUCGCGa-GCGCGaCGUCGGc -3' miRNA: 3'- gCAugUAGCGCgaCGCGCaGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 8737 | 0.68 | 0.406682 |
Target: 5'- gGUGCGUCGUaGaaGCGCGcCGCCGc- -3' miRNA: 3'- gCAUGUAGCG-CgaCGCGCaGCGGCuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 18869 | 0.68 | 0.406682 |
Target: 5'- gCGUGCcucggCGCGCcGCuGCG-CGCCGAc -3' miRNA: 3'- -GCAUGua---GCGCGaCG-CGCaGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 25643 | 0.68 | 0.397503 |
Target: 5'- aGUugAUCGCGCUGuCGC--UGCCGu- -3' miRNA: 3'- gCAugUAGCGCGAC-GCGcaGCGGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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