miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24329 5' -52.2 NC_005263.2 + 3448 0.66 0.813596
Target:  5'- -cUUCGgcGCGCGCGA-CGCAUcGAGg -3'
miRNA:   3'- gcAAGCuaCGCGCGCUcGUGUA-CUUu -5'
24329 5' -52.2 NC_005263.2 + 21732 0.66 0.811639
Target:  5'- --aUCGGcaUGCGCGCGugauaagaucgcGCGCAUGAc- -3'
miRNA:   3'- gcaAGCU--ACGCGCGCu-----------CGUGUACUuu -5'
24329 5' -52.2 NC_005263.2 + 47188 0.67 0.783419
Target:  5'- cCGUUCGAUGCGuCGaCGAGUAa------ -3'
miRNA:   3'- -GCAAGCUACGC-GC-GCUCGUguacuuu -5'
24329 5' -52.2 NC_005263.2 + 153 0.67 0.773001
Target:  5'- gGUUCGGUGCGagcaCGCGAuccGCGCccGggGc -3'
miRNA:   3'- gCAAGCUACGC----GCGCU---CGUGuaCuuU- -5'
24329 5' -52.2 NC_005263.2 + 16594 0.67 0.762426
Target:  5'- gCGUUCGccgggcucGCGCGCGAGCAgCAg---- -3'
miRNA:   3'- -GCAAGCua------CGCGCGCUCGU-GUacuuu -5'
24329 5' -52.2 NC_005263.2 + 32101 0.67 0.762426
Target:  5'- gCGgcgUCGGUGCGauCGAGCGCuucGAGAu -3'
miRNA:   3'- -GCa--AGCUACGCgcGCUCGUGua-CUUU- -5'
24329 5' -52.2 NC_005263.2 + 6612 0.67 0.762426
Target:  5'- gCGUUCGGcgGCGCGCucGGCGCGgucGAGc -3'
miRNA:   3'- -GCAAGCUa-CGCGCGc-UCGUGUa--CUUu -5'
24329 5' -52.2 NC_005263.2 + 4471 0.67 0.762426
Target:  5'- -cUUCGuccGUGCGCGCGGGUcgGCGUGc-- -3'
miRNA:   3'- gcAAGC---UACGCGCGCUCG--UGUACuuu -5'
24329 5' -52.2 NC_005263.2 + 39685 0.67 0.740853
Target:  5'- aCGUggacgCGAUGgG-GCGAGCGCGagcUGGAAa -3'
miRNA:   3'- -GCAa----GCUACgCgCGCUCGUGU---ACUUU- -5'
24329 5' -52.2 NC_005263.2 + 25387 0.68 0.707631
Target:  5'- aCGUUCGGcaGCuGCGCGAccuGCACGuUGAAAu -3'
miRNA:   3'- -GCAAGCUa-CG-CGCGCU---CGUGU-ACUUU- -5'
24329 5' -52.2 NC_005263.2 + 38329 0.68 0.707631
Target:  5'- --aUCGAUGCGCGCGcgaccguGCACGcGGc- -3'
miRNA:   3'- gcaAGCUACGCGCGCu------CGUGUaCUuu -5'
24329 5' -52.2 NC_005263.2 + 21337 0.68 0.696379
Target:  5'- gGUcUGAUGUuCGCGAGCGCGcUGAAu -3'
miRNA:   3'- gCAaGCUACGcGCGCUCGUGU-ACUUu -5'
24329 5' -52.2 NC_005263.2 + 24203 0.69 0.639354
Target:  5'- ---gCGAUGCGCGCGAccugguucaGCGCGccguUGAAAu -3'
miRNA:   3'- gcaaGCUACGCGCGCU---------CGUGU----ACUUU- -5'
24329 5' -52.2 NC_005263.2 + 32870 0.69 0.616411
Target:  5'- aGUUCGAUGUGCcgGCGGGCGgcgaguuuCGUGGc- -3'
miRNA:   3'- gCAAGCUACGCG--CGCUCGU--------GUACUuu -5'
24329 5' -52.2 NC_005263.2 + 18792 0.72 0.46161
Target:  5'- uCGUgcUCGccGCGCGCGAuGCGCAUGc-- -3'
miRNA:   3'- -GCA--AGCuaCGCGCGCU-CGUGUACuuu -5'
24329 5' -52.2 NC_005263.2 + 30429 0.73 0.411257
Target:  5'- --gUCGGUGCggucgaGCGCGAGCAgCGUGAGc -3'
miRNA:   3'- gcaAGCUACG------CGCGCUCGU-GUACUUu -5'
24329 5' -52.2 NC_005263.2 + 14176 0.74 0.373514
Target:  5'- gCGgcCGGUGUGCGCGAGCuGCGUGc-- -3'
miRNA:   3'- -GCaaGCUACGCGCGCUCG-UGUACuuu -5'
24329 5' -52.2 NC_005263.2 + 47380 1.07 0.002186
Target:  5'- gCGUUCGAUGCGCGCGAGCACAUGAAAa -3'
miRNA:   3'- -GCAAGCUACGCGCGCUCGUGUACUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.