miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24330 3' -58.6 NC_005263.2 + 9381 0.66 0.526893
Target:  5'- uGCGggaauuucAGCGcGGCGGCCaGCugCUCGa -3'
miRNA:   3'- gCGCa-------UCGCaCCGCUGGaUGugGGGU- -5'
24330 3' -58.6 NC_005263.2 + 45712 0.66 0.526893
Target:  5'- gGCGaAGCGUGGUgccccGGCCUGcCGCUCg- -3'
miRNA:   3'- gCGCaUCGCACCG-----CUGGAU-GUGGGgu -5'
24330 3' -58.6 NC_005263.2 + 30808 0.66 0.516487
Target:  5'- uCGCGcgcCGUGGCGACUgccuCGCgCCAg -3'
miRNA:   3'- -GCGCaucGCACCGCUGGau--GUGgGGU- -5'
24330 3' -58.6 NC_005263.2 + 20303 0.66 0.506165
Target:  5'- uCGCGaacGCGaUGGCGGCCgcCGUCCCGa -3'
miRNA:   3'- -GCGCau-CGC-ACCGCUGGauGUGGGGU- -5'
24330 3' -58.6 NC_005263.2 + 42329 0.66 0.495932
Target:  5'- aGCGgcGCGUGcGCGACUaucaaccgugACAUUCCGa -3'
miRNA:   3'- gCGCauCGCAC-CGCUGGa---------UGUGGGGU- -5'
24330 3' -58.6 NC_005263.2 + 13213 0.66 0.485794
Target:  5'- uCGCGccaGGCGUGaGCG-CCUGCGCgaggUCCAu -3'
miRNA:   3'- -GCGCa--UCGCAC-CGCuGGAUGUG----GGGU- -5'
24330 3' -58.6 NC_005263.2 + 9575 0.66 0.485794
Target:  5'- gGCGgcGCGcucgcugcccuUGGCGACCUgcgACACgUCGa -3'
miRNA:   3'- gCGCauCGC-----------ACCGCUGGA---UGUGgGGU- -5'
24330 3' -58.6 NC_005263.2 + 21044 0.66 0.476755
Target:  5'- uGgGUAGCGgcuuccugcccgacgGGCGGCCgcGCAUCCUg -3'
miRNA:   3'- gCgCAUCGCa--------------CCGCUGGa-UGUGGGGu -5'
24330 3' -58.6 NC_005263.2 + 28208 0.67 0.455996
Target:  5'- -cCGUGGCGagcuguUGGUGGCCUGCAUCggCCGc -3'
miRNA:   3'- gcGCAUCGC------ACCGCUGGAUGUGG--GGU- -5'
24330 3' -58.6 NC_005263.2 + 7660 0.67 0.455996
Target:  5'- --aGUGGCGUuGCGGCCUuuGCCCg- -3'
miRNA:   3'- gcgCAUCGCAcCGCUGGAugUGGGgu -5'
24330 3' -58.6 NC_005263.2 + 19026 0.67 0.446283
Target:  5'- uCGCGUAGCGa--CGGCCgaugcgcgcCGCCCCGa -3'
miRNA:   3'- -GCGCAUCGCaccGCUGGau-------GUGGGGU- -5'
24330 3' -58.6 NC_005263.2 + 33693 0.67 0.446283
Target:  5'- gGCGcAGCGcGGCGGCaaUACGCgCCAg -3'
miRNA:   3'- gCGCaUCGCaCCGCUGg-AUGUGgGGU- -5'
24330 3' -58.6 NC_005263.2 + 27375 0.67 0.436687
Target:  5'- aGCGgcGCGgcGGCGGCCgGCGCgCUg -3'
miRNA:   3'- gCGCauCGCa-CCGCUGGaUGUGgGGu -5'
24330 3' -58.6 NC_005263.2 + 44014 0.67 0.42721
Target:  5'- uCGCGUccgcucggcaAGgGUGGCGACUU-CGCCgCGu -3'
miRNA:   3'- -GCGCA----------UCgCACCGCUGGAuGUGGgGU- -5'
24330 3' -58.6 NC_005263.2 + 23917 0.67 0.417857
Target:  5'- cCGCG-AGCGUgaccgucgcuuuGGCGGCUUGCGCgUCGu -3'
miRNA:   3'- -GCGCaUCGCA------------CCGCUGGAUGUGgGGU- -5'
24330 3' -58.6 NC_005263.2 + 22077 0.68 0.381724
Target:  5'- cCGgGUGuCGUGGUGACCgGCACaCCAg -3'
miRNA:   3'- -GCgCAUcGCACCGCUGGaUGUGgGGU- -5'
24330 3' -58.6 NC_005263.2 + 26818 0.69 0.339583
Target:  5'- uCGCGUAGU-UGGCgcccauGACCUGCccgaGCCCCc -3'
miRNA:   3'- -GCGCAUCGcACCG------CUGGAUG----UGGGGu -5'
24330 3' -58.6 NC_005263.2 + 30451 0.69 0.330777
Target:  5'- aGCGUgAGCGcGGCGGCCUucgcguuGCGCCaCAu -3'
miRNA:   3'- gCGCA-UCGCaCCGCUGGA-------UGUGGgGU- -5'
24330 3' -58.6 NC_005263.2 + 12879 0.74 0.157375
Target:  5'- uGCGUGGUGUGGCGACUcAgACUgCAg -3'
miRNA:   3'- gCGCAUCGCACCGCUGGaUgUGGgGU- -5'
24330 3' -58.6 NC_005263.2 + 47476 1.08 0.000469
Target:  5'- uCGCGUAGCGUGGCGACCUACACCCCAg -3'
miRNA:   3'- -GCGCAUCGCACCGCUGGAUGUGGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.