miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24330 5' -56 NC_005263.2 + 2683 0.66 0.584919
Target:  5'- uGUGGuAGCugAUcgCGCGGCcGCUCGGc- -3'
miRNA:   3'- gCGCU-UCGugUA--GCGCCG-CGAGCUua -5'
24330 5' -56 NC_005263.2 + 37731 0.67 0.57389
Target:  5'- gGCccGGCGCGUgGCGGCucaaugguuuGCUCGAu- -3'
miRNA:   3'- gCGcuUCGUGUAgCGCCG----------CGAGCUua -5'
24330 5' -56 NC_005263.2 + 13669 0.67 0.57389
Target:  5'- cCGCGucGCGaaugCGCaGGCGUUCGAu- -3'
miRNA:   3'- -GCGCuuCGUgua-GCG-CCGCGAGCUua -5'
24330 5' -56 NC_005263.2 + 29174 0.67 0.57389
Target:  5'- gCGCGcucGAGCGCucgugccgCGCGGUcacGCUCGAc- -3'
miRNA:   3'- -GCGC---UUCGUGua------GCGCCG---CGAGCUua -5'
24330 5' -56 NC_005263.2 + 23892 0.67 0.56291
Target:  5'- aGCGuGAGCGCGcUCGUGaGCGCgcccgCGAGc -3'
miRNA:   3'- gCGC-UUCGUGU-AGCGC-CGCGa----GCUUa -5'
24330 5' -56 NC_005263.2 + 22301 0.67 0.56291
Target:  5'- uGCGAacccgaauGGCAgCGUCGCGgGCGUcgacgUCGAGUc -3'
miRNA:   3'- gCGCU--------UCGU-GUAGCGC-CGCG-----AGCUUA- -5'
24330 5' -56 NC_005263.2 + 37402 0.67 0.56291
Target:  5'- gCGCGAcGUGCAUCGCGuCGCgCGGc- -3'
miRNA:   3'- -GCGCUuCGUGUAGCGCcGCGaGCUua -5'
24330 5' -56 NC_005263.2 + 13963 0.67 0.551987
Target:  5'- aCGCGgcGCGCGuUCGCGGgGCg----- -3'
miRNA:   3'- -GCGCuuCGUGU-AGCGCCgCGagcuua -5'
24330 5' -56 NC_005263.2 + 26731 0.67 0.547636
Target:  5'- gCGCGAAGCGCAccaucacgucgagUUGCGcacguucauucagcGCGCUCGc-- -3'
miRNA:   3'- -GCGCUUCGUGU-------------AGCGC--------------CGCGAGCuua -5'
24330 5' -56 NC_005263.2 + 19466 0.67 0.54113
Target:  5'- uCGCGgcGUuCcgCaCGGCGCUCGAGc -3'
miRNA:   3'- -GCGCuuCGuGuaGcGCCGCGAGCUUa -5'
24330 5' -56 NC_005263.2 + 39111 0.67 0.54113
Target:  5'- gCGCGAcucguGCGCcgugCGuCGGCGCUCGu-- -3'
miRNA:   3'- -GCGCUu----CGUGua--GC-GCCGCGAGCuua -5'
24330 5' -56 NC_005263.2 + 2337 0.67 0.530344
Target:  5'- aCGCG-AGCACcgUGCGGCcguugcgcaGCUgGAAg -3'
miRNA:   3'- -GCGCuUCGUGuaGCGCCG---------CGAgCUUa -5'
24330 5' -56 NC_005263.2 + 1484 0.67 0.530344
Target:  5'- aGC-AGGCGC-UCGCGGCaCUCGGu- -3'
miRNA:   3'- gCGcUUCGUGuAGCGCCGcGAGCUua -5'
24330 5' -56 NC_005263.2 + 10854 0.67 0.530344
Target:  5'- uGCG-GGCuacgGCGUCGCGGCGgaaCUCGGc- -3'
miRNA:   3'- gCGCuUCG----UGUAGCGCCGC---GAGCUua -5'
24330 5' -56 NC_005263.2 + 18756 0.67 0.530344
Target:  5'- gCGCGAucguaGGCGg--CGCGGUGCUCGc-- -3'
miRNA:   3'- -GCGCU-----UCGUguaGCGCCGCGAGCuua -5'
24330 5' -56 NC_005263.2 + 8840 0.68 0.519638
Target:  5'- uGCGAucaaGCAUCGCGcGCaGCUCGGc- -3'
miRNA:   3'- gCGCUucg-UGUAGCGC-CG-CGAGCUua -5'
24330 5' -56 NC_005263.2 + 17624 0.68 0.519638
Target:  5'- gCGCGGGucGCGCAUCGaugcguuccguCGGCGCUaCGGc- -3'
miRNA:   3'- -GCGCUU--CGUGUAGC-----------GCCGCGA-GCUua -5'
24330 5' -56 NC_005263.2 + 33220 0.68 0.509018
Target:  5'- aCGUGcAGCAUgagUGCGGCcuGCUCGAGUc -3'
miRNA:   3'- -GCGCuUCGUGua-GCGCCG--CGAGCUUA- -5'
24330 5' -56 NC_005263.2 + 36502 0.68 0.509018
Target:  5'- gGCGAAGUGCugcgccacuucAUCGCGGgGCgCGAc- -3'
miRNA:   3'- gCGCUUCGUG-----------UAGCGCCgCGaGCUua -5'
24330 5' -56 NC_005263.2 + 27420 0.68 0.509018
Target:  5'- aGCG-AGUGCuGUCGCGucGCGCUCGGc- -3'
miRNA:   3'- gCGCuUCGUG-UAGCGC--CGCGAGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.