miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24331 3' -56.6 NC_005264.1 + 152692 0.74 0.413986
Target:  5'- gGGGGCGgGUaugaaucuGGGGCGGAGGCUGAc -3'
miRNA:   3'- -CCCCGUgCGgu------CUCUGUCUCCGAUUu -5'
24331 3' -56.6 NC_005264.1 + 113694 0.66 0.885478
Target:  5'- cGGGGUGCaagGCUu-GGGCAGAGGCg--- -3'
miRNA:   3'- -CCCCGUG---CGGucUCUGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 133146 0.66 0.848004
Target:  5'- cGGGagGCGaCCGGAuGAC-GAGGCUGGAc -3'
miRNA:   3'- cCCCg-UGC-GGUCU-CUGuCUCCGAUUU- -5'
24331 3' -56.6 NC_005264.1 + 127021 0.67 0.839889
Target:  5'- cGGGC-CGCCauugcGGGGccgGCAGAGGCg--- -3'
miRNA:   3'- cCCCGuGCGG-----UCUC---UGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 125834 0.67 0.839889
Target:  5'- aGGGGaCGgucaggguguUGCCGGAGGCGGcGGCg--- -3'
miRNA:   3'- -CCCC-GU----------GCGGUCUCUGUCuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 18548 0.67 0.839889
Target:  5'- aGGGCGCGCCGGcgucAGuCGGAgcGGCa--- -3'
miRNA:   3'- cCCCGUGCGGUC----UCuGUCU--CCGauuu -5'
24331 3' -56.6 NC_005264.1 + 133301 0.67 0.814426
Target:  5'- aGGGCggugACGCUgcgAGAGACGGuGGCg--- -3'
miRNA:   3'- cCCCG----UGCGG---UCUCUGUCuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 125207 0.68 0.796599
Target:  5'- uGGGGCACGCCGGucGCcauGGCc--- -3'
miRNA:   3'- -CCCCGUGCGGUCucUGucuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 3853 0.68 0.787456
Target:  5'- uGGGUccuGCGCCGGGGAUu-GGGCUGc- -3'
miRNA:   3'- cCCCG---UGCGGUCUCUGucUCCGAUuu -5'
24331 3' -56.6 NC_005264.1 + 16567 0.68 0.778171
Target:  5'- uGGGCgGCGCCGG-GGCGGcGGCg--- -3'
miRNA:   3'- cCCCG-UGCGGUCuCUGUCuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 158436 0.73 0.486605
Target:  5'- gGGGGCacugcgcugcucaGCGCCGGAGACAucgguuuugccGGGGCg--- -3'
miRNA:   3'- -CCCCG-------------UGCGGUCUCUGU-----------CUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 153573 0.71 0.628213
Target:  5'- cGGGGUACGUgAGGGAagcGGGGcCUAGAa -3'
miRNA:   3'- -CCCCGUGCGgUCUCUgu-CUCC-GAUUU- -5'
24331 3' -56.6 NC_005264.1 + 121552 0.69 0.689766
Target:  5'- cGGGGgGCGacuuCCcGAGACGGGGGUUGc- -3'
miRNA:   3'- -CCCCgUGC----GGuCUCUGUCUCCGAUuu -5'
24331 3' -56.6 NC_005264.1 + 93014 0.69 0.70999
Target:  5'- gGGGGCA-GUCA-AGGCAGuGGCUAGu -3'
miRNA:   3'- -CCCCGUgCGGUcUCUGUCuCCGAUUu -5'
24331 3' -56.6 NC_005264.1 + 33998 0.69 0.720006
Target:  5'- cGGGCaagACGCCGGAGACgaugacgacgcGGGGGUa--- -3'
miRNA:   3'- cCCCG---UGCGGUCUCUG-----------UCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 99402 0.69 0.720006
Target:  5'- cGGGGUAUGCCAGGcaagcGAUGGcuauuacauuuGGGCUAAc -3'
miRNA:   3'- -CCCCGUGCGGUCU-----CUGUC-----------UCCGAUUu -5'
24331 3' -56.6 NC_005264.1 + 152973 0.68 0.759213
Target:  5'- -uGGCGCGCCGGGaccgcgcccGAUAGGGGCc--- -3'
miRNA:   3'- ccCCGUGCGGUCU---------CUGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 162008 1.08 0.002612
Target:  5'- uGGGGCACGCCAGAGACAGAGGCUAAAg -3'
miRNA:   3'- -CCCCGUGCGGUCUCUGUCUCCGAUUU- -5'
24331 3' -56.6 NC_005264.1 + 146930 0.66 0.863633
Target:  5'- cGGGGCAguaGUUcguGGcGCAGAGGCUGGAu -3'
miRNA:   3'- -CCCCGUg--CGGu--CUcUGUCUCCGAUUU- -5'
24331 3' -56.6 NC_005264.1 + 131618 0.66 0.848004
Target:  5'- uGGGCGCGCgCGGAGAagaaCAGAuGGUc--- -3'
miRNA:   3'- cCCCGUGCG-GUCUCU----GUCU-CCGauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.