miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24331 3' -56.6 NC_005264.1 + 152973 0.68 0.759213
Target:  5'- -uGGCGCGCCGGGaccgcgcccGAUAGGGGCc--- -3'
miRNA:   3'- ccCCGUGCGGUCU---------CUGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 33946 0.68 0.759213
Target:  5'- -uGGCGCGCCGGGaccgcgcccGAUAGGGGCc--- -3'
miRNA:   3'- ccCCGUGCGGUCU---------CUGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 16506 0.69 0.7398
Target:  5'- -aGGCACGCCGGcgcAGACGGAuGGUa--- -3'
miRNA:   3'- ccCCGUGCGGUC---UCUGUCU-CCGauuu -5'
24331 3' -56.6 NC_005264.1 + 33998 0.69 0.720006
Target:  5'- cGGGCaagACGCCGGAGACgaugacgacgcGGGGGUa--- -3'
miRNA:   3'- cCCCG---UGCGGUCUCUG-----------UCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 99402 0.69 0.720006
Target:  5'- cGGGGUAUGCCAGGcaagcGAUGGcuauuacauuuGGGCUAAc -3'
miRNA:   3'- -CCCCGUGCGGUCU-----CUGUC-----------UCCGAUUu -5'
24331 3' -56.6 NC_005264.1 + 93014 0.69 0.70999
Target:  5'- gGGGGCA-GUCA-AGGCAGuGGCUAGu -3'
miRNA:   3'- -CCCCGUgCGGUcUCUGUCuCCGAUUu -5'
24331 3' -56.6 NC_005264.1 + 54579 0.69 0.699907
Target:  5'- uGGGGCGCgacggGUCGGAGAUGGAGcuugaGCUAGu -3'
miRNA:   3'- -CCCCGUG-----CGGUCUCUGUCUC-----CGAUUu -5'
24331 3' -56.6 NC_005264.1 + 57858 0.69 0.699907
Target:  5'- -cGGUcgucaGCGCCAGAGACGGcGGCa--- -3'
miRNA:   3'- ccCCG-----UGCGGUCUCUGUCuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 2525 0.69 0.689766
Target:  5'- cGGGGgGCGacuuCCcGAGACGGGGGUUGc- -3'
miRNA:   3'- -CCCCgUGC----GGuCUCUGUCUCCGAUuu -5'
24331 3' -56.6 NC_005264.1 + 121552 0.69 0.689766
Target:  5'- cGGGGgGCGacuuCCcGAGACGGGGGUUGc- -3'
miRNA:   3'- -CCCCgUGC----GGuCUCUGUCUCCGAUuu -5'
24331 3' -56.6 NC_005264.1 + 45132 0.7 0.666273
Target:  5'- uGGGGCgaagaaccagacagGCGCCAcGAcGCGGAGGCa--- -3'
miRNA:   3'- -CCCCG--------------UGCGGU-CUcUGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 93169 0.7 0.659089
Target:  5'- cGGGGCGCcgcuCCAGAcugGGCGGAGcaGCUGAGg -3'
miRNA:   3'- -CCCCGUGc---GGUCU---CUGUCUC--CGAUUU- -5'
24331 3' -56.6 NC_005264.1 + 34546 0.71 0.628213
Target:  5'- cGGGGUACGUgAGGGAagcGGGGcCUAGAa -3'
miRNA:   3'- -CCCCGUGCGgUCUCUgu-CUCC-GAUUU- -5'
24331 3' -56.6 NC_005264.1 + 153573 0.71 0.628213
Target:  5'- cGGGGUACGUgAGGGAagcGGGGcCUAGAa -3'
miRNA:   3'- -CCCCGUGCGgUCUCUgu-CUCC-GAUUU- -5'
24331 3' -56.6 NC_005264.1 + 132769 0.71 0.617917
Target:  5'- cGGGCGCGgCGGcgccGACgAGGGGCUAAu -3'
miRNA:   3'- cCCCGUGCgGUCu---CUG-UCUCCGAUUu -5'
24331 3' -56.6 NC_005264.1 + 33671 0.71 0.597364
Target:  5'- cGGGUAUGaauCuGGGGCGGAGGCUGAc -3'
miRNA:   3'- cCCCGUGCg--GuCUCUGUCUCCGAUUu -5'
24331 3' -56.6 NC_005264.1 + 39409 0.73 0.486605
Target:  5'- gGGGGCacugcgcugcucaGCGCCGGAGACAucgguuuugccGGGGCg--- -3'
miRNA:   3'- -CCCCG-------------UGCGGUCUCUGU-----------CUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 158436 0.73 0.486605
Target:  5'- gGGGGCacugcgcugcucaGCGCCGGAGACAucgguuuugccGGGGCg--- -3'
miRNA:   3'- -CCCCG-------------UGCGGUCUCUGU-----------CUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 91557 0.73 0.478017
Target:  5'- cGGGCGCgGCgGGGGGCAcGAGGCUu-- -3'
miRNA:   3'- cCCCGUG-CGgUCUCUGU-CUCCGAuuu -5'
24331 3' -56.6 NC_005264.1 + 152692 0.74 0.413986
Target:  5'- gGGGGCGgGUaugaaucuGGGGCGGAGGCUGAc -3'
miRNA:   3'- -CCCCGUgCGgu------CUCUGUCUCCGAUUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.