miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24332 3' -48.4 NC_005264.1 + 75948 0.66 0.999486
Target:  5'- uGGUCUCUaucGCGGCCgCCGccuguGAGGAaAGCAu -3'
miRNA:   3'- -CCAGGGA---CGUCGG-GGU-----UUUUUaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 45414 0.7 0.985057
Target:  5'- cGGcgCCCUGCgcgccgcgacAGCCCCGAuagcGUAAUAg -3'
miRNA:   3'- -CCa-GGGACG----------UCGGGGUUuuu-UAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 23126 0.71 0.973438
Target:  5'- cGGUCCCuaaUGCucGGCCCauaAAGAAAUAAa- -3'
miRNA:   3'- -CCAGGG---ACG--UCGGGg--UUUUUUAUUgu -5'
24332 3' -48.4 NC_005264.1 + 161274 1.13 0.009179
Target:  5'- aGGUCCCUGCAGCCCCAAAAAAUAACAa -3'
miRNA:   3'- -CCAGGGACGUCGGGGUUUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 109645 0.67 0.998551
Target:  5'- cGGUUgcaaCUcGCGGCCCCGGAGAcucGACGu -3'
miRNA:   3'- -CCAGg---GA-CGUCGGGGUUUUUua-UUGU- -5'
24332 3' -48.4 NC_005264.1 + 42284 0.67 0.998551
Target:  5'- cGGUCaacgCCgcGgGGCCCCAAAAAAcGGCGc -3'
miRNA:   3'- -CCAG----GGa-CgUCGGGGUUUUUUaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 69771 0.67 0.998182
Target:  5'- aGGUCgCC-GCGGCCCCucccgc-AGCAg -3'
miRNA:   3'- -CCAG-GGaCGUCGGGGuuuuuuaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 63977 0.67 0.997482
Target:  5'- --aCCCcGCuaccgcuuGCCCCAaAAGAAUAACAg -3'
miRNA:   3'- ccaGGGaCGu-------CGGGGU-UUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 39979 0.68 0.995105
Target:  5'- cGGUCguauuuccuCCUGCGGCCCCGc--------- -3'
miRNA:   3'- -CCAG---------GGACGUCGGGGUuuuuuauugu -5'
24332 3' -48.4 NC_005264.1 + 91125 0.69 0.989863
Target:  5'- uGG-CCgaCUGCAGCCCCAcgcGAGAA-AGCGu -3'
miRNA:   3'- -CCaGG--GACGUCGGGGU---UUUUUaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 162318 0.69 0.993365
Target:  5'- gGGUgCUCgGCGGCCCCAu-AAGUAuCAa -3'
miRNA:   3'- -CCA-GGGaCGUCGGGGUuuUUUAUuGU- -5'
24332 3' -48.4 NC_005264.1 + 109917 0.68 0.996455
Target:  5'- cGG-CCaUGCAauGCCCCucGAAGUGGCGg -3'
miRNA:   3'- -CCaGGgACGU--CGGGGuuUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 120607 0.66 0.99936
Target:  5'- uGUCCCUGCcgcuguuuAGCcgccucggaaaCCCGGAAAAggcgGACAc -3'
miRNA:   3'- cCAGGGACG--------UCG-----------GGGUUUUUUa---UUGU- -5'
24332 3' -48.4 NC_005264.1 + 76814 0.69 0.992327
Target:  5'- aGGUUCCUgGCGGCCUCGuuGAAa---- -3'
miRNA:   3'- -CCAGGGA-CGUCGGGGUuuUUUauugu -5'
24332 3' -48.4 NC_005264.1 + 84498 0.66 0.99936
Target:  5'- cGUCCgCUGCAucuCCgCGAGAGAUGAUg -3'
miRNA:   3'- cCAGG-GACGUc--GGgGUUUUUUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 35810 0.67 0.997482
Target:  5'- cGGgcgCCuCUGcCGGCCCCGc--AAUGGCGg -3'
miRNA:   3'- -CCa--GG-GAC-GUCGGGGUuuuUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 5353 0.69 0.989863
Target:  5'- cGUCCCggGCGGCCUCGc-GGAUGAUu -3'
miRNA:   3'- cCAGGGa-CGUCGGGGUuuUUUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 120539 0.7 0.980998
Target:  5'- cGGcagCCCUGCgacGGCCCCGGAAGc----- -3'
miRNA:   3'- -CCa--GGGACG---UCGGGGUUUUUuauugu -5'
24332 3' -48.4 NC_005264.1 + 38707 0.66 0.99936
Target:  5'- aGGUCCCaGCucGCCCCcAGGcGUAGa- -3'
miRNA:   3'- -CCAGGGaCGu-CGGGGuUUUuUAUUgu -5'
24332 3' -48.4 NC_005264.1 + 16789 0.67 0.998551
Target:  5'- cGGUCUCUGUGGCCaCU-----GUGACGu -3'
miRNA:   3'- -CCAGGGACGUCGG-GGuuuuuUAUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.