Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 124380 | 0.69 | 0.989863 |
Target: 5'- cGUCCCggGCGGCCUCGc-GGAUGAUu -3' miRNA: 3'- cCAGGGa-CGUCGGGGUuuUUUAUUGu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 57709 | 0.69 | 0.989863 |
Target: 5'- --cCCCUGCAGCuCCCGAAu------- -3' miRNA: 3'- ccaGGGACGUCG-GGGUUUuuuauugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 9395 | 0.69 | 0.988419 |
Target: 5'- aGGUCCUcgUGCAGCgCCA----AUGACu -3' miRNA: 3'- -CCAGGG--ACGUCGgGGUuuuuUAUUGu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 55466 | 0.69 | 0.988419 |
Target: 5'- cGUCCCuucUGUuacGCCCgCGAGAAAUAAUAg -3' miRNA: 3'- cCAGGG---ACGu--CGGG-GUUUUUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 25885 | 0.7 | 0.98682 |
Target: 5'- --aCCCUGCGuagauugcgauGCCCCAGGcgaacAGAUGGCGg -3' miRNA: 3'- ccaGGGACGU-----------CGGGGUUU-----UUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 45414 | 0.7 | 0.985057 |
Target: 5'- cGGcgCCCUGCgcgccgcgacAGCCCCGAuagcGUAAUAg -3' miRNA: 3'- -CCa-GGGACG----------UCGGGGUUuuu-UAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 120539 | 0.7 | 0.980998 |
Target: 5'- cGGcagCCCUGCgacGGCCCCGGAAGc----- -3' miRNA: 3'- -CCa--GGGACG---UCGGGGUUUUUuauugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 10176 | 0.71 | 0.973438 |
Target: 5'- uGGUCCCaGCccucGUCCCAGAGA--AACAa -3' miRNA: 3'- -CCAGGGaCGu---CGGGGUUUUUuaUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 129203 | 0.71 | 0.973438 |
Target: 5'- uGGUCCCaGCccucGUCCCAGAGA--AACAa -3' miRNA: 3'- -CCAGGGaCGu---CGGGGUUUUUuaUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 23126 | 0.71 | 0.973438 |
Target: 5'- cGGUCCCuaaUGCucGGCCCauaAAGAAAUAAa- -3' miRNA: 3'- -CCAGGG---ACG--UCGGGg--UUUUUUAUUgu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 144852 | 0.71 | 0.97049 |
Target: 5'- aGUCCCUGgGGCCUaGGGGAAUAAa- -3' miRNA: 3'- cCAGGGACgUCGGGgUUUUUUAUUgu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 76195 | 0.72 | 0.95178 |
Target: 5'- uGUCCCccGCGGCgCCCAAcgcagaaGAGGUGGCGa -3' miRNA: 3'- cCAGGGa-CGUCG-GGGUU-------UUUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 42170 | 0.75 | 0.881879 |
Target: 5'- uGGUCCCUGUAGCUCUucAGGAUuuccACGa -3' miRNA: 3'- -CCAGGGACGUCGGGGuuUUUUAu---UGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 104169 | 0.76 | 0.815094 |
Target: 5'- gGGUgCgCCUGCAGCgCCGGAGAAUggUAu -3' miRNA: 3'- -CCA-G-GGACGUCGgGGUUUUUUAuuGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 161274 | 1.13 | 0.009179 |
Target: 5'- aGGUCCCUGCAGCCCCAAAAAAUAACAa -3' miRNA: 3'- -CCAGGGACGUCGGGGUUUUUUAUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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