miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24332 5' -57.4 NC_005264.1 + 161309 1.09 0.002587
Target:  5'- gCGCGUUCUCAUCUAGGGACCCCGGGAg -3'
miRNA:   3'- -GCGCAAGAGUAGAUCCCUGGGGCCCU- -5'
24332 5' -57.4 NC_005264.1 + 19247 0.73 0.487213
Target:  5'- cCGCGccaUUCUCGUuccCUccGGGCCCCGGGGa -3'
miRNA:   3'- -GCGC---AAGAGUA---GAucCCUGGGGCCCU- -5'
24332 5' -57.4 NC_005264.1 + 32909 0.69 0.742138
Target:  5'- uGCGUUCUCgAUCgcgcAGGGGUCgCGGGGc -3'
miRNA:   3'- gCGCAAGAG-UAGa---UCCCUGGgGCCCU- -5'
24332 5' -57.4 NC_005264.1 + 25650 0.67 0.812859
Target:  5'- cCGCGUUUUCcucaaucggcacGUCUGGGGGCagcagaagggaCGGGAc -3'
miRNA:   3'- -GCGCAAGAG------------UAGAUCCCUGgg---------GCCCU- -5'
24332 5' -57.4 NC_005264.1 + 124370 0.67 0.854952
Target:  5'- aGCGgucgCUCGUCccGGGcGGCCUCGcGGAu -3'
miRNA:   3'- gCGCaa--GAGUAGa-UCC-CUGGGGC-CCU- -5'
24332 5' -57.4 NC_005264.1 + 5343 0.67 0.854952
Target:  5'- aGCGgucgCUCGUCccGGGcGGCCUCGcGGAu -3'
miRNA:   3'- gCGCaa--GAGUAGa-UCC-CUGGGGC-CCU- -5'
24332 5' -57.4 NC_005264.1 + 139315 0.66 0.869803
Target:  5'- uGCGUUCUCggGUCgacAGGG-CCguaCGGGGg -3'
miRNA:   3'- gCGCAAGAG--UAGa--UCCCuGGg--GCCCU- -5'
24332 5' -57.4 NC_005264.1 + 85832 0.66 0.883837
Target:  5'- gCGCGUcaCUCAcgu-GGGACCCggaGGGAg -3'
miRNA:   3'- -GCGCAa-GAGUagauCCCUGGGg--CCCU- -5'
24332 5' -57.4 NC_005264.1 + 23054 0.66 0.890536
Target:  5'- aCGCGUUCgugCuugCUuGGGGuaCCGGGAg -3'
miRNA:   3'- -GCGCAAGa--Gua-GAuCCCUggGGCCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.