Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24333 | 3' | -57.7 | NC_005264.1 | + | 12137 | 0.67 | 0.767054 |
Target: 5'- -cAGCCccgccgagaGCCCugCCUCGCGCAGu--- -3' miRNA: 3'- uaUCGG---------CGGGugGGGGUGUGUCuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 7160 | 0.67 | 0.747804 |
Target: 5'- -cGGCCagGUCCAUCCgCGCACGGGUc- -3' miRNA: 3'- uaUCGG--CGGGUGGGgGUGUGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 158352 | 0.67 | 0.747804 |
Target: 5'- -cGGCCGCaCCgcGCCCCUugACGGu--- -3' miRNA: 3'- uaUCGGCG-GG--UGGGGGugUGUCuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 72132 | 0.67 | 0.757485 |
Target: 5'- --cGCCGCCUGCCggauaCCACACGGu--- -3' miRNA: 3'- uauCGGCGGGUGGg----GGUGUGUCuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 40195 | 0.67 | 0.767054 |
Target: 5'- -cAGCgCGCCCGCCCUCGCGg------ -3' miRNA: 3'- uaUCG-GCGGGUGGGGGUGUgucuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 106076 | 0.67 | 0.776501 |
Target: 5'- -aGGCgaGCUUACCCCgaGCACAGAUg- -3' miRNA: 3'- uaUCGg-CGGGUGGGGg-UGUGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 71104 | 0.67 | 0.728143 |
Target: 5'- -cAGCCGCCCucgGCCCUgGugaGCAGAUa- -3' miRNA: 3'- uaUCGGCGGG---UGGGGgUg--UGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 54375 | 0.67 | 0.73802 |
Target: 5'- --cGCgGCCaccggAUCCCCGCGCGGAUa- -3' miRNA: 3'- uauCGgCGGg----UGGGGGUGUGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 157542 | 0.67 | 0.73802 |
Target: 5'- -cAGUCGCCCGCCCC---ACGGGUc- -3' miRNA: 3'- uaUCGGCGGGUGGGGgugUGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 82967 | 0.67 | 0.73802 |
Target: 5'- --cGCCGCCgCGCCCCCgugacgaagguACGguGAUa- -3' miRNA: 3'- uauCGGCGG-GUGGGGG-----------UGUguCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 130468 | 0.67 | 0.73802 |
Target: 5'- -cGGCCGCCggCAUCCUCGC-CAGAa-- -3' miRNA: 3'- uaUCGGCGG--GUGGGGGUGuGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 158094 | 0.67 | 0.747804 |
Target: 5'- -cGGCgGUCCACCCCCGgACGc---- -3' miRNA: 3'- uaUCGgCGGGUGGGGGUgUGUcuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 126187 | 0.67 | 0.747804 |
Target: 5'- -cGGCCagGUCCAUCCgCGCACGGGUc- -3' miRNA: 3'- uaUCGG--CGGGUGGGgGUGUGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 86342 | 0.67 | 0.757485 |
Target: 5'- -cGGUCGCCUAuucCCCCCgACAgAGAUg- -3' miRNA: 3'- uaUCGGCGGGU---GGGGG-UGUgUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 137472 | 0.67 | 0.757485 |
Target: 5'- cUAGCCGCCCuCCUcgaCCACACGc---- -3' miRNA: 3'- uAUCGGCGGGuGGG---GGUGUGUcuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 7102 | 0.67 | 0.766102 |
Target: 5'- -aGGCgGCCCAccauaacCCCCCGCGCGu---- -3' miRNA: 3'- uaUCGgCGGGU-------GGGGGUGUGUcuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 131164 | 0.67 | 0.767054 |
Target: 5'- -cAGCCccgccgagaGCCCugCCUCGCGCAGu--- -3' miRNA: 3'- uaUCGG---------CGGGugGGGGUGUGUCuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 159222 | 0.67 | 0.767054 |
Target: 5'- -cAGCgCGCCCGCCCUCGCGg------ -3' miRNA: 3'- uaUCG-GCGGGUGGGGGUGUgucuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 59082 | 0.67 | 0.747804 |
Target: 5'- -cGGCCGCCCGCCUCaGCAU-GAa-- -3' miRNA: 3'- uaUCGGCGGGUGGGGgUGUGuCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 79668 | 0.66 | 0.794081 |
Target: 5'- --uGCCGCugacaaauucuccCCAUCCCCGCgACAGAc-- -3' miRNA: 3'- uauCGGCG-------------GGUGGGGGUG-UGUCUaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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