Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24333 | 3' | -57.7 | NC_005264.1 | + | 145700 | 0.67 | 0.728143 |
Target: 5'- uGUAGCCGCCC-CCUCgACgccguaccGCAGAa-- -3' miRNA: 3'- -UAUCGGCGGGuGGGGgUG--------UGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 125805 | 0.68 | 0.718181 |
Target: 5'- --uGCCGUgU-CCCCCGCACGGAg-- -3' miRNA: 3'- uauCGGCGgGuGGGGGUGUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 75544 | 0.68 | 0.698044 |
Target: 5'- -gGGCCGCguaCGCUCCCguaACGCGGAUg- -3' miRNA: 3'- uaUCGGCGg--GUGGGGG---UGUGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 40444 | 0.68 | 0.698044 |
Target: 5'- -aAGCCcuCgCCGCCCCCAgACGGAg-- -3' miRNA: 3'- uaUCGGc-G-GGUGGGGGUgUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 146684 | 0.68 | 0.698044 |
Target: 5'- uUAGCCGCCCcuugcaACCCCuCGCGCu----- -3' miRNA: 3'- uAUCGGCGGG------UGGGG-GUGUGucuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 146278 | 0.68 | 0.69703 |
Target: 5'- --cGCCGCCCcggcgccGCCCaCCGCGCuGAa-- -3' miRNA: 3'- uauCGGCGGG-------UGGG-GGUGUGuCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 158983 | 0.68 | 0.687886 |
Target: 5'- -gGGCaGCCCAauCCCCgGCGCAGGa-- -3' miRNA: 3'- uaUCGgCGGGU--GGGGgUGUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 158352 | 0.67 | 0.747804 |
Target: 5'- -cGGCCGCaCCgcGCCCCUugACGGu--- -3' miRNA: 3'- uaUCGGCG-GG--UGGGGGugUGUCuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 72132 | 0.67 | 0.757485 |
Target: 5'- --cGCCGCCUGCCggauaCCACACGGu--- -3' miRNA: 3'- uauCGGCGGGUGGg----GGUGUGUCuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 12137 | 0.67 | 0.767054 |
Target: 5'- -cAGCCccgccgagaGCCCugCCUCGCGCAGu--- -3' miRNA: 3'- uaUCGG---------CGGGugGGGGUGUGUCuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 37337 | 0.66 | 0.830117 |
Target: 5'- gAUGGCCGCgCACCCCgACGu------ -3' miRNA: 3'- -UAUCGGCGgGUGGGGgUGUgucuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 16952 | 0.66 | 0.830117 |
Target: 5'- -cAGCuCGCCagCAUCCCCACgagaGCAGAa-- -3' miRNA: 3'- uaUCG-GCGG--GUGGGGGUG----UGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 31695 | 0.66 | 0.82159 |
Target: 5'- -gGGCUGCCCGCCaaagguCgCGCGCGGGg-- -3' miRNA: 3'- uaUCGGCGGGUGG------GgGUGUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 155849 | 0.66 | 0.812888 |
Target: 5'- --cGCCGCCCGCagggacaaCCCCGCGCc----- -3' miRNA: 3'- uauCGGCGGGUG--------GGGGUGUGucuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 88348 | 0.66 | 0.812888 |
Target: 5'- cUGGCCGCCUuuggcGCUCUCGCAacCAGAa-- -3' miRNA: 3'- uAUCGGCGGG-----UGGGGGUGU--GUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 41037 | 0.66 | 0.812888 |
Target: 5'- -gGGCCGaCCACuCCCCAgACGGu--- -3' miRNA: 3'- uaUCGGCgGGUG-GGGGUgUGUCuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 97280 | 0.66 | 0.794992 |
Target: 5'- gGUAGUgGCCgCugCCUCGCGCAGc--- -3' miRNA: 3'- -UAUCGgCGG-GugGGGGUGUGUCuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 12904 | 0.66 | 0.785816 |
Target: 5'- -gAGCCGCCCGgCCUCGCAg------ -3' miRNA: 3'- uaUCGGCGGGUgGGGGUGUgucuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 106076 | 0.67 | 0.776501 |
Target: 5'- -aGGCgaGCUUACCCCgaGCACAGAUg- -3' miRNA: 3'- uaUCGg-CGGGUGGGGg-UGUGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 40195 | 0.67 | 0.767054 |
Target: 5'- -cAGCgCGCCCGCCCUCGCGg------ -3' miRNA: 3'- uaUCG-GCGGGUGGGGGUGUgucuaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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