miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24333 5' -50.6 NC_005264.1 + 136563 0.66 0.990977
Target:  5'- --cGAUC-GCGAuCCAGGAacgCGCCGc- -3'
miRNA:   3'- aaaUUAGaCGCU-GGUCCUa--GCGGUau -5'
24333 5' -50.6 NC_005264.1 + 85071 0.66 0.988033
Target:  5'- ----cUCUGCGGCCGcgucgucagauucGGAUacggCGCCGUAg -3'
miRNA:   3'- aaauuAGACGCUGGU-------------CCUA----GCGGUAU- -5'
24333 5' -50.6 NC_005264.1 + 109503 0.66 0.986564
Target:  5'- --cAGUCUGUaGCCAGGuaCGCCGUu -3'
miRNA:   3'- aaaUUAGACGcUGGUCCuaGCGGUAu -5'
24333 5' -50.6 NC_005264.1 + 101062 0.68 0.966461
Target:  5'- -----gCUGCucgagucGAUCAGGGUCGCCAa- -3'
miRNA:   3'- aaauuaGACG-------CUGGUCCUAGCGGUau -5'
24333 5' -50.6 NC_005264.1 + 126225 0.69 0.937377
Target:  5'- --cAAUCUGUGAUCGGGAgCGCuCAa- -3'
miRNA:   3'- aaaUUAGACGCUGGUCCUaGCG-GUau -5'
24333 5' -50.6 NC_005264.1 + 124033 0.71 0.901902
Target:  5'- ---cGUCcGCG-CCGGGGUCGCCGc- -3'
miRNA:   3'- aaauUAGaCGCuGGUCCUAGCGGUau -5'
24333 5' -50.6 NC_005264.1 + 5006 0.71 0.901902
Target:  5'- ---cGUCcGCG-CCGGGGUCGCCGc- -3'
miRNA:   3'- aaauUAGaCGCuGGUCCUAGCGGUau -5'
24333 5' -50.6 NC_005264.1 + 161506 0.71 0.883587
Target:  5'- --aGGUCUGCGugucCCcgcucgcuggguuuaGGGAUCGCCGUAc -3'
miRNA:   3'- aaaUUAGACGCu---GG---------------UCCUAGCGGUAU- -5'
24333 5' -50.6 NC_005264.1 + 42479 0.71 0.883587
Target:  5'- --aGGUCUGCGugucCCcgcucgcuggguuuaGGGAUCGCCGUAc -3'
miRNA:   3'- aaaUUAGACGCu---GG---------------UCCUAGCGGUAU- -5'
24333 5' -50.6 NC_005264.1 + 27633 0.73 0.822611
Target:  5'- ---cAUCUGgGucucaGCCAGGAUCGCCGa- -3'
miRNA:   3'- aaauUAGACgC-----UGGUCCUAGCGGUau -5'
24333 5' -50.6 NC_005264.1 + 161098 1.05 0.013707
Target:  5'- uUUUAAUCUGCGACCAGGAUCGCCAUAg -3'
miRNA:   3'- -AAAUUAGACGCUGGUCCUAGCGGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.