miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24334 5' -56.5 NC_005264.1 + 115964 0.66 0.91033
Target:  5'- gGUacGCGGcGCCCGACaGGGACGc-- -3'
miRNA:   3'- gCGaaCGCC-UGGGCUGaUCCUGCagu -5'
24334 5' -56.5 NC_005264.1 + 100281 0.66 0.91033
Target:  5'- cCGCgcaGCGGGCUCGGCUugcuggaaccGGGAUcUCGg -3'
miRNA:   3'- -GCGaa-CGCCUGGGCUGA----------UCCUGcAGU- -5'
24334 5' -56.5 NC_005264.1 + 85449 0.66 0.906122
Target:  5'- gCGCUUGCcGGCgucugggCCGACUccagugagcuuugccAGGAUGUCGc -3'
miRNA:   3'- -GCGAACGcCUG-------GGCUGA---------------UCCUGCAGU- -5'
24334 5' -56.5 NC_005264.1 + 52416 0.66 0.904284
Target:  5'- uGCUUGUagauugcguuGGGCCCGACgcuuuugAGcaGCGUCAg -3'
miRNA:   3'- gCGAACG----------CCUGGGCUGa------UCc-UGCAGU- -5'
24334 5' -56.5 NC_005264.1 + 97921 0.66 0.900547
Target:  5'- uCGCUuucuuccacaucgaaUGCGGG-CUGGCgcaucuGGACGUCAa -3'
miRNA:   3'- -GCGA---------------ACGCCUgGGCUGau----CCUGCAGU- -5'
24334 5' -56.5 NC_005264.1 + 84963 0.66 0.898011
Target:  5'- uCGCUUGCGG-CCaGGCUGcuGCGUUAg -3'
miRNA:   3'- -GCGAACGCCuGGgCUGAUccUGCAGU- -5'
24334 5' -56.5 NC_005264.1 + 21221 0.66 0.891513
Target:  5'- gGCggUGCcccGACCgCGAUUuGGACGUCAu -3'
miRNA:   3'- gCGa-ACGc--CUGG-GCUGAuCCUGCAGU- -5'
24334 5' -56.5 NC_005264.1 + 25501 0.67 0.877857
Target:  5'- gGCUagGauGGCCgCGuCUAGGAUGUCAa -3'
miRNA:   3'- gCGAa-CgcCUGG-GCuGAUCCUGCAGU- -5'
24334 5' -56.5 NC_005264.1 + 44879 0.67 0.863349
Target:  5'- aGCcuggggagGCGGGCCCGucgucguCUGGGGCGg-- -3'
miRNA:   3'- gCGaa------CGCCUGGGCu------GAUCCUGCagu -5'
24334 5' -56.5 NC_005264.1 + 58005 0.67 0.848032
Target:  5'- gGCUcaGCGGcCCCGGCggacAGGcCGUCGu -3'
miRNA:   3'- gCGAa-CGCCuGGGCUGa---UCCuGCAGU- -5'
24334 5' -56.5 NC_005264.1 + 50583 0.68 0.840084
Target:  5'- gCGCacGCGGcgcugagcaGCCCGGCgcuGGACGUUc -3'
miRNA:   3'- -GCGaaCGCC---------UGGGCUGau-CCUGCAGu -5'
24334 5' -56.5 NC_005264.1 + 154370 0.68 0.823646
Target:  5'- uGCUUGgGGACCCaGCUGgcGGAUgcuaugGUCAg -3'
miRNA:   3'- gCGAACgCCUGGGcUGAU--CCUG------CAGU- -5'
24334 5' -56.5 NC_005264.1 + 9058 0.69 0.751764
Target:  5'- aGCgUUGaGGACCCGACgcgcugAGGACGa-- -3'
miRNA:   3'- gCG-AACgCCUGGGCUGa-----UCCUGCagu -5'
24334 5' -56.5 NC_005264.1 + 128085 0.69 0.751764
Target:  5'- aGCgUUGaGGACCCGACgcgcugAGGACGa-- -3'
miRNA:   3'- gCG-AACgCCUGGGCUGa-----UCCUGCagu -5'
24334 5' -56.5 NC_005264.1 + 4831 0.69 0.751764
Target:  5'- uGCacGCGGGCCUcuguuuCUAGGGCGUUAg -3'
miRNA:   3'- gCGaaCGCCUGGGcu----GAUCCUGCAGU- -5'
24334 5' -56.5 NC_005264.1 + 131469 0.7 0.692324
Target:  5'- gCGCggUGCGGucuaaagGCCCGGC-AGG-CGUCAg -3'
miRNA:   3'- -GCGa-ACGCC-------UGGGCUGaUCCuGCAGU- -5'
24334 5' -56.5 NC_005264.1 + 12442 0.7 0.692324
Target:  5'- gCGCggUGCGGucuaaagGCCCGGC-AGG-CGUCAg -3'
miRNA:   3'- -GCGa-ACGCC-------UGGGCUGaUCCuGCAGU- -5'
24334 5' -56.5 NC_005264.1 + 54411 0.71 0.653242
Target:  5'- uCGUUguugcGCGGcGCgCCGACUAGGGCGUgGg -3'
miRNA:   3'- -GCGAa----CGCC-UG-GGCUGAUCCUGCAgU- -5'
24334 5' -56.5 NC_005264.1 + 119488 0.71 0.643162
Target:  5'- uGCUUGUGGAUgUGGCUgcgcAGGGCGUg- -3'
miRNA:   3'- gCGAACGCCUGgGCUGA----UCCUGCAgu -5'
24334 5' -56.5 NC_005264.1 + 20293 0.72 0.592786
Target:  5'- gCGCUUGCGGcCCCGA--GGGGCugagGUCGc -3'
miRNA:   3'- -GCGAACGCCuGGGCUgaUCCUG----CAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.