Results 1 - 20 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24335 | 3' | -60.5 | NC_005264.1 | + | 49342 | 0.66 | 0.763798 |
Target: 5'- -gUGUACGaGgGuCGCGGUuggcaCUCGCGCGAc -3' miRNA: 3'- gaACGUGC-CgC-GCGCUA-----GGGCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 39253 | 0.66 | 0.716992 |
Target: 5'- --gGCuCGGCuuGUGAUCCCgagacuugGCGCGAc -3' miRNA: 3'- gaaCGuGCCGcgCGCUAGGG--------CGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 101339 | 0.67 | 0.707397 |
Target: 5'- --cGCGCGGCGCuagcCGAgaCCGCGgGGc -3' miRNA: 3'- gaaCGUGCCGCGc---GCUagGGCGCgCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 159532 | 1.08 | 0.001443 |
Target: 5'- gCUUGCACGGCGCGCGAUCCCGCGCGAg -3' miRNA: 3'- -GAACGUGCCGCGCGCUAGGGCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 115276 | 0.66 | 0.754621 |
Target: 5'- -cUGCAguauUGuaGCGCGAcaacgacgUCCCGCGCa- -3' miRNA: 3'- gaACGU----GCcgCGCGCU--------AGGGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 91222 | 0.66 | 0.745343 |
Target: 5'- --cGCGCauuCGCGCGAUagCCCGCGUa- -3' miRNA: 3'- gaaCGUGcc-GCGCGCUA--GGGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 129032 | 0.66 | 0.745343 |
Target: 5'- cCUUGC-CGGCGaGcCGGUCCaaagcggcgUGCGCGGc -3' miRNA: 3'- -GAACGuGCCGCgC-GCUAGG---------GCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 59025 | 0.66 | 0.745343 |
Target: 5'- --gGCA-GGCGCGUcaggucGGUCuCCGCGCa- -3' miRNA: 3'- gaaCGUgCCGCGCG------CUAG-GGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 39542 | 0.66 | 0.735974 |
Target: 5'- -cUGC-CGcCGCcccGCGGuUCCCGCGCGGc -3' miRNA: 3'- gaACGuGCcGCG---CGCU-AGGGCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 30619 | 0.66 | 0.716992 |
Target: 5'- --gGCgGCGGCGaCG-GAUCCgCGCGCa- -3' miRNA: 3'- gaaCG-UGCCGC-GCgCUAGG-GCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 98329 | 0.66 | 0.726521 |
Target: 5'- --gGCGCGGacagaacaGCGCGGUCCaG-GCGAc -3' miRNA: 3'- gaaCGUGCCg-------CGCGCUAGGgCgCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 142967 | 0.66 | 0.739732 |
Target: 5'- --aGCGCGGcCGCgGCGGUCUCucgggcaugaggcggGCGUGGg -3' miRNA: 3'- gaaCGUGCC-GCG-CGCUAGGG---------------CGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 112268 | 0.66 | 0.763798 |
Target: 5'- --aGCGCcGCGUGCGcuUCCCGCacGCGc -3' miRNA: 3'- gaaCGUGcCGCGCGCu-AGGGCG--CGCu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 4453 | 0.66 | 0.726521 |
Target: 5'- --gGCcucUGGCuGCGCGAUUCUGgGCGGg -3' miRNA: 3'- gaaCGu--GCCG-CGCGCUAGGGCgCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 48665 | 0.66 | 0.763798 |
Target: 5'- --gGCACGGgGgGCGAggagaUCUgGgCGCGAg -3' miRNA: 3'- gaaCGUGCCgCgCGCU-----AGGgC-GCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 10826 | 0.66 | 0.745343 |
Target: 5'- --aGCGCccgauGGCgauauGCGCGAgCCCGCGUGu -3' miRNA: 3'- gaaCGUG-----CCG-----CGCGCUaGGGCGCGCu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 45042 | 0.66 | 0.716992 |
Target: 5'- -aUGgACGGCGaCGagGAUgCCGCGCa- -3' miRNA: 3'- gaACgUGCCGC-GCg-CUAgGGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 20336 | 0.66 | 0.716992 |
Target: 5'- uCUUGCACGuuGC-CG-UUCCGCGCGc -3' miRNA: 3'- -GAACGUGCcgCGcGCuAGGGCGCGCu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 126300 | 0.66 | 0.754621 |
Target: 5'- --cGCuuuCgGGCGCGCGGccgauggcUCCUGCGCc- -3' miRNA: 3'- gaaCGu--G-CCGCGCGCU--------AGGGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 13189 | 0.66 | 0.745343 |
Target: 5'- --cGCGCuGCGCGCGGaUCCGuCGCc- -3' miRNA: 3'- gaaCGUGcCGCGCGCUaGGGC-GCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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