miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 5' -58.5 NC_005264.1 + 3768 0.66 0.82801
Target:  5'- --gGGCGCUGcggGCCCuuggucgacCgCCGCCGAu -3'
miRNA:   3'- agaCCGCGACuuaCGGGu--------G-GGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 4401 0.74 0.393346
Target:  5'- cUCcGGCGCUGAgcagcgcaGUGCCC-CCUucGCCGAc -3'
miRNA:   3'- -AGaCCGCGACU--------UACGGGuGGG--UGGCU- -5'
24335 5' -58.5 NC_005264.1 + 12250 0.67 0.754041
Target:  5'- cUCUGGCGCcuccacgucgggaaUGGccGUCCGCCC-CCa- -3'
miRNA:   3'- -AGACCGCG--------------ACUuaCGGGUGGGuGGcu -5'
24335 5' -58.5 NC_005264.1 + 18186 0.67 0.775465
Target:  5'- --cGGCGCaaGAAUGCCgGCUaACCGGu -3'
miRNA:   3'- agaCCGCGa-CUUACGGgUGGgUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 25010 0.67 0.775465
Target:  5'- cUCaGGCGCUGcAUGCCUcuccugaggcGCCCGgCCa- -3'
miRNA:   3'- -AGaCCGCGACuUACGGG----------UGGGU-GGcu -5'
24335 5' -58.5 NC_005264.1 + 30841 0.79 0.192606
Target:  5'- aUCUGGCGCcGGucgGCCCACcgCCACCGGc -3'
miRNA:   3'- -AGACCGCGaCUua-CGGGUG--GGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 32373 0.67 0.737846
Target:  5'- uUCUGGCGa-GGAUGCCgGCggccggcguCCGCCGc -3'
miRNA:   3'- -AGACCGCgaCUUACGGgUG---------GGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 37270 0.69 0.668917
Target:  5'- --aGGCGCUccugccGAAgccCCCugCCGCCGAu -3'
miRNA:   3'- agaCCGCGA------CUUac-GGGugGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 38061 0.72 0.462293
Target:  5'- --aGGCGCcGcucucacAAUGCCUACCCGCCGu -3'
miRNA:   3'- agaCCGCGaC-------UUACGGGUGGGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 40809 0.69 0.618638
Target:  5'- --gGGCGCUGGAUGauuagCGCCgGCCGGu -3'
miRNA:   3'- agaCCGCGACUUACgg---GUGGgUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 41311 0.67 0.737846
Target:  5'- ---cGCGCUGAAgucgcgcgagGCCCGCCgACCa- -3'
miRNA:   3'- agacCGCGACUUa---------CGGGUGGgUGGcu -5'
24335 5' -58.5 NC_005264.1 + 42186 0.71 0.500488
Target:  5'- -aUGGCagGUUGGA-GCCgCGCCCACCGGc -3'
miRNA:   3'- agACCG--CGACUUaCGG-GUGGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 53990 0.66 0.811103
Target:  5'- cUCUGuuuaagaagucGCGCgUGGAUGCCUACUUGCgCGAc -3'
miRNA:   3'- -AGAC-----------CGCG-ACUUACGGGUGGGUG-GCU- -5'
24335 5' -58.5 NC_005264.1 + 54132 0.7 0.568595
Target:  5'- gUUGGCGC----UGCCCACC-ACCGAc -3'
miRNA:   3'- aGACCGCGacuuACGGGUGGgUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 54442 0.86 0.067282
Target:  5'- gCUGGCGCgggGGAUGCCCACC-GCCGAg -3'
miRNA:   3'- aGACCGCGa--CUUACGGGUGGgUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 55621 0.73 0.409317
Target:  5'- gCUGGCGCcGAAUGCCaaccgcgCGCgCCGCCGc -3'
miRNA:   3'- aGACCGCGaCUUACGG-------GUG-GGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 56511 0.68 0.678919
Target:  5'- gCUGGgGCUcuguggagGggUcGCCCuGCCCGCCGc -3'
miRNA:   3'- aGACCgCGA--------CuuA-CGGG-UGGGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 58475 0.68 0.718466
Target:  5'- gUCUGGgaaCGcCUGAcgGUCgGCCCGCCuGAg -3'
miRNA:   3'- -AGACC---GC-GACUuaCGGgUGGGUGG-CU- -5'
24335 5' -58.5 NC_005264.1 + 64350 0.7 0.608582
Target:  5'- aCUGuaGCGCUGAggagAUGCCCucgcgcguGCCgGCCGGg -3'
miRNA:   3'- aGAC--CGCGACU----UACGGG--------UGGgUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 64509 0.67 0.756869
Target:  5'- cCUGgaccGCGCUGuucUGUCCGCgCCGCCGc -3'
miRNA:   3'- aGAC----CGCGACuu-ACGGGUG-GGUGGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.