miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 5' -58.5 NC_005264.1 + 41311 0.67 0.737846
Target:  5'- ---cGCGCUGAAgucgcgcgagGCCCGCCgACCa- -3'
miRNA:   3'- agacCGCGACUUa---------CGGGUGGgUGGcu -5'
24335 5' -58.5 NC_005264.1 + 160338 0.67 0.737846
Target:  5'- ---cGCGCUGAAgucgcgcgagGCCCGCCgACCa- -3'
miRNA:   3'- agacCGCGACUUa---------CGGGUGGgUGGcu -5'
24335 5' -58.5 NC_005264.1 + 73380 0.68 0.727227
Target:  5'- uUUUGGCGCggcucUGCCaagccaaCACCCGCUGAc -3'
miRNA:   3'- -AGACCGCGacuu-ACGG-------GUGGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 58475 0.68 0.718466
Target:  5'- gUCUGGgaaCGcCUGAcgGUCgGCCCGCCuGAg -3'
miRNA:   3'- -AGACC---GC-GACUuaCGGgUGGGUGG-CU- -5'
24335 5' -58.5 NC_005264.1 + 153878 0.68 0.698801
Target:  5'- uUUUGGUGCUGcagcGAguugGCCgGCCCgaagGCCGAg -3'
miRNA:   3'- -AGACCGCGAC----UUa---CGGgUGGG----UGGCU- -5'
24335 5' -58.5 NC_005264.1 + 81512 0.68 0.688882
Target:  5'- cCUGGCGg-GAAgcgGCUCACCUGCaCGAu -3'
miRNA:   3'- aGACCGCgaCUUa--CGGGUGGGUG-GCU- -5'
24335 5' -58.5 NC_005264.1 + 56511 0.68 0.678919
Target:  5'- gCUGGgGCUcuguggagGggUcGCCCuGCCCGCCGc -3'
miRNA:   3'- aGACCgCGA--------CuuA-CGGG-UGGGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 37270 0.69 0.668917
Target:  5'- --aGGCGCUccugccGAAgccCCCugCCGCCGAu -3'
miRNA:   3'- agaCCGCGA------CUUac-GGGugGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 156297 0.69 0.668917
Target:  5'- --aGGCGCUccugccGAAgccCCCugCCGCCGAu -3'
miRNA:   3'- agaCCGCGA------CUUac-GGGugGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 98149 0.69 0.638773
Target:  5'- uUCgGGCGagcAcgGCCUGCCCGCCGGc -3'
miRNA:   3'- -AGaCCGCgacUuaCGGGUGGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 159835 0.69 0.618638
Target:  5'- --gGGCGCUGGAUGauuagCGCCgGCCGGu -3'
miRNA:   3'- agaCCGCGACUUACgg---GUGGgUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 40809 0.69 0.618638
Target:  5'- --gGGCGCUGGAUGauuagCGCCgGCCGGu -3'
miRNA:   3'- agaCCGCGACUUACgg---GUGGgUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 104989 0.69 0.618638
Target:  5'- cUCUGGCGCUGAcgaccguuUGCagcgCACCgGCCa- -3'
miRNA:   3'- -AGACCGCGACUu-------ACGg---GUGGgUGGcu -5'
24335 5' -58.5 NC_005264.1 + 64350 0.7 0.608582
Target:  5'- aCUGuaGCGCUGAggagAUGCCCucgcgcguGCCgGCCGGg -3'
miRNA:   3'- aGAC--CGCGACU----UACGGG--------UGGgUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 76348 0.7 0.608582
Target:  5'- --gGGCGCUGGAgggcgaGCCUgaACCCACUGc -3'
miRNA:   3'- agaCCGCGACUUa-----CGGG--UGGGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 54132 0.7 0.568595
Target:  5'- gUUGGCGC----UGCCCACC-ACCGAc -3'
miRNA:   3'- aGACCGCGacuuACGGGUGGgUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 42186 0.71 0.500488
Target:  5'- -aUGGCagGUUGGA-GCCgCGCCCACCGGc -3'
miRNA:   3'- agACCG--CGACUUaCGG-GUGGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 161213 0.71 0.500488
Target:  5'- -aUGGCagGUUGGA-GCCgCGCCCACCGGc -3'
miRNA:   3'- agACCG--CGACUUaCGG-GUGGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 38061 0.72 0.462293
Target:  5'- --aGGCGCcGcucucacAAUGCCUACCCGCCGu -3'
miRNA:   3'- agaCCGCGaC-------UUACGGGUGGGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 55621 0.73 0.409317
Target:  5'- gCUGGCGCcGAAUGCCaaccgcgCGCgCCGCCGc -3'
miRNA:   3'- aGACCGCGaCUUACGG-------GUG-GGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.