Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24336 | 3' | -56.7 | NC_005264.1 | + | 126412 | 0.67 | 0.818357 |
Target: 5'- cGUCU-CCGCGGCCUGCaggUACUUGGg- -3' miRNA: 3'- -CAGGuGGUGCCGGAUGa--GUGGACUgu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 128903 | 0.69 | 0.715612 |
Target: 5'- gGUCCcggcgcGCCACGGCCUuCcCAgcCCUGGCGg -3' miRNA: 3'- -CAGG------UGGUGCCGGAuGaGU--GGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 131330 | 0.66 | 0.881067 |
Target: 5'- -cCCGCC-CGaGCCUggaGC-CGCCUGACc -3' miRNA: 3'- caGGUGGuGC-CGGA---UGaGUGGACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 136692 | 0.66 | 0.866595 |
Target: 5'- aGUCCucGCCGCGGCCUGggaCAUCaUGGCc -3' miRNA: 3'- -CAGG--UGGUGCCGGAUga-GUGG-ACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 144234 | 0.67 | 0.851285 |
Target: 5'- cGUCCGCUGCGGUCUucuccggcugcuACcgCACC-GACAc -3' miRNA: 3'- -CAGGUGGUGCCGGA------------UGa-GUGGaCUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 145159 | 0.8 | 0.222678 |
Target: 5'- -gCCGCCGCGGCCUcgGCUgCGCCUGAg- -3' miRNA: 3'- caGGUGGUGCCGGA--UGA-GUGGACUgu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 152073 | 0.71 | 0.634804 |
Target: 5'- aGUCCugUcgGCGGUCUGCgcuacCACCUGAUc -3' miRNA: 3'- -CAGGugG--UGCCGGAUGa----GUGGACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 157572 | 0.71 | 0.594079 |
Target: 5'- -cCCGCCGucCGGCCgcgACUCGCCUcccGGCGc -3' miRNA: 3'- caGGUGGU--GCCGGa--UGAGUGGA---CUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 159245 | 1.09 | 0.002596 |
Target: 5'- cGUCCACCACGGCCUACUCACCUGACAg -3' miRNA: 3'- -CAGGUGGUGCCGGAUGAGUGGACUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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