Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24336 | 3' | -56.7 | NC_005264.1 | + | 20034 | 0.66 | 0.894661 |
|
Target: 5'- aGUCCuACCAUGGCCUgGCaugUCGCCacGCGg -3' miRNA: 3'- -CAGG-UGGUGCCGGA-UG---AGUGGacUGU- -5' |
|||||||
| 24336 | 3' | -56.7 | NC_005264.1 | + | 20020 | 0.67 | 0.859042 |
|
Target: 5'- gGUCUACCACGGCgcGCUCGCacccguGCAg -3' miRNA: 3'- -CAGGUGGUGCCGgaUGAGUGgac---UGU- -5' |
|||||||
| 24336 | 3' | -56.7 | NC_005264.1 | + | 12303 | 0.66 | 0.881067 |
|
Target: 5'- -cCCGCC-CGaGCCUggaGC-CGCCUGACc -3' miRNA: 3'- caGGUGGuGC-CGGA---UGaGUGGACUGu -5' |
|||||||
| 24336 | 3' | -56.7 | NC_005264.1 | + | 9877 | 0.69 | 0.715612 |
|
Target: 5'- gGUCCcggcgcGCCACGGCCUuCcCAgcCCUGGCGg -3' miRNA: 3'- -CAGG------UGGUGCCGGAuGaGU--GGACUGU- -5' |
|||||||
| 24336 | 3' | -56.7 | NC_005264.1 | + | 6227 | 0.69 | 0.754599 |
|
Target: 5'- -cCCGCCGCGGCC-GC-CGCgaGACu -3' miRNA: 3'- caGGUGGUGCCGGaUGaGUGgaCUGu -5' |
|||||||
| 24336 | 3' | -56.7 | NC_005264.1 | + | 5821 | 0.71 | 0.604237 |
|
Target: 5'- aGUCCGgCGgcggUGGCCgccACUCGCCUGGCc -3' miRNA: 3'- -CAGGUgGU----GCCGGa--UGAGUGGACUGu -5' |
|||||||
| 24336 | 3' | -56.7 | NC_005264.1 | + | 4320 | 0.77 | 0.310191 |
|
Target: 5'- cGUCCACCACagcgcaGGCCUGC-C-CCUGGCGg -3' miRNA: 3'- -CAGGUGGUG------CCGGAUGaGuGGACUGU- -5' |
|||||||
| 24336 | 3' | -56.7 | NC_005264.1 | + | 3609 | 0.66 | 0.894661 |
|
Target: 5'- -aCCGCCGCggggGGCCgcgaggGCgggCGCgCUGACAu -3' miRNA: 3'- caGGUGGUG----CCGGa-----UGa--GUG-GACUGU- -5' |
|||||||
| 24336 | 3' | -56.7 | NC_005264.1 | + | 3165 | 0.67 | 0.835187 |
|
Target: 5'- -aCCACCGaacgcguccuUGGCCUugUCaaagaACCUGGCc -3' miRNA: 3'- caGGUGGU----------GCCGGAugAG-----UGGACUGu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home