miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 3' -56.7 NC_005264.1 + 159245 1.09 0.002596
Target:  5'- cGUCCACCACGGCCUACUCACCUGACAg -3'
miRNA:   3'- -CAGGUGGUGCCGGAUGAGUGGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 145159 0.8 0.222678
Target:  5'- -gCCGCCGCGGCCUcgGCUgCGCCUGAg- -3'
miRNA:   3'- caGGUGGUGCCGGA--UGA-GUGGACUgu -5'
24336 3' -56.7 NC_005264.1 + 123347 0.77 0.310191
Target:  5'- cGUCCACCACagcgcaGGCCUGC-C-CCUGGCGg -3'
miRNA:   3'- -CAGGUGGUG------CCGGAUGaGuGGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 4320 0.77 0.310191
Target:  5'- cGUCCACCACagcgcaGGCCUGC-C-CCUGGCGg -3'
miRNA:   3'- -CAGGUGGUG------CCGGAUGaGuGGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 66472 0.76 0.339583
Target:  5'- -aCCGCCGCGGCCagACUCaauGCUUGGCGg -3'
miRNA:   3'- caGGUGGUGCCGGa-UGAG---UGGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 82574 0.75 0.412833
Target:  5'- cUCCGCUgaGCGGCCUcGCUCGCCcucaaggcgUGACAa -3'
miRNA:   3'- cAGGUGG--UGCCGGA-UGAGUGG---------ACUGU- -5'
24336 3' -56.7 NC_005264.1 + 92081 0.72 0.573854
Target:  5'- aUUCACCGCGuuguugccGCUUGCUCGCCUGuACGc -3'
miRNA:   3'- cAGGUGGUGC--------CGGAUGAGUGGAC-UGU- -5'
24336 3' -56.7 NC_005264.1 + 93799 0.71 0.594079
Target:  5'- -gCgGCCGCGGCCaagagaucgACUCGCCgUGGCAc -3'
miRNA:   3'- caGgUGGUGCCGGa--------UGAGUGG-ACUGU- -5'
24336 3' -56.7 NC_005264.1 + 157572 0.71 0.594079
Target:  5'- -cCCGCCGucCGGCCgcgACUCGCCUcccGGCGc -3'
miRNA:   3'- caGGUGGU--GCCGGa--UGAGUGGA---CUGU- -5'
24336 3' -56.7 NC_005264.1 + 38545 0.71 0.594079
Target:  5'- -cCCGCCGucCGGCCgcgACUCGCCUcccGGCGc -3'
miRNA:   3'- caGGUGGU--GCCGGa--UGAGUGGA---CUGU- -5'
24336 3' -56.7 NC_005264.1 + 124184 0.71 0.594079
Target:  5'- -gCCGCCGCGGCCa--UCAUCUcGACGg -3'
miRNA:   3'- caGGUGGUGCCGGaugAGUGGA-CUGU- -5'
24336 3' -56.7 NC_005264.1 + 124847 0.71 0.604237
Target:  5'- aGUCCGgCGgcggUGGCCgccACUCGCCUGGCc -3'
miRNA:   3'- -CAGGUgGU----GCCGGa--UGAGUGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 5821 0.71 0.604237
Target:  5'- aGUCCGgCGgcggUGGCCgccACUCGCCUGGCc -3'
miRNA:   3'- -CAGGUgGU----GCCGGa--UGAGUGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 83436 0.71 0.614415
Target:  5'- uUCCGCCGCGGCCUcGCcaCGCCcgcGGCGg -3'
miRNA:   3'- cAGGUGGUGCCGGA-UGa-GUGGa--CUGU- -5'
24336 3' -56.7 NC_005264.1 + 75952 0.71 0.614415
Target:  5'- cUCUAUCGCGGCC-GC-CGCCUGugAg -3'
miRNA:   3'- cAGGUGGUGCCGGaUGaGUGGACugU- -5'
24336 3' -56.7 NC_005264.1 + 152073 0.71 0.634804
Target:  5'- aGUCCugUcgGCGGUCUGCgcuacCACCUGAUc -3'
miRNA:   3'- -CAGGugG--UGCCGGAUGa----GUGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 65456 0.7 0.655184
Target:  5'- -cUCugCACGGCCUGCggGCCUG-CGa -3'
miRNA:   3'- caGGugGUGCCGGAUGagUGGACuGU- -5'
24336 3' -56.7 NC_005264.1 + 125283 0.7 0.665351
Target:  5'- cUCCGCgGCGGCgCgcugucGCuUCGCCUGACGc -3'
miRNA:   3'- cAGGUGgUGCCG-Ga-----UG-AGUGGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 61802 0.7 0.695657
Target:  5'- cUCCACCG-GGCCgcggGCaUCGCCgGGCAg -3'
miRNA:   3'- cAGGUGGUgCCGGa---UG-AGUGGaCUGU- -5'
24336 3' -56.7 NC_005264.1 + 50454 0.7 0.705665
Target:  5'- -aCCGCCAaGGCgCUGCUCaACCUGGu- -3'
miRNA:   3'- caGGUGGUgCCG-GAUGAG-UGGACUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.