miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 3' -56.7 NC_005264.1 + 3165 0.67 0.835187
Target:  5'- -aCCACCGaacgcguccuUGGCCUugUCaaagaACCUGGCc -3'
miRNA:   3'- caGGUGGU----------GCCGGAugAG-----UGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 3609 0.66 0.894661
Target:  5'- -aCCGCCGCggggGGCCgcgaggGCgggCGCgCUGACAu -3'
miRNA:   3'- caGGUGGUG----CCGGa-----UGa--GUG-GACUGU- -5'
24336 3' -56.7 NC_005264.1 + 4320 0.77 0.310191
Target:  5'- cGUCCACCACagcgcaGGCCUGC-C-CCUGGCGg -3'
miRNA:   3'- -CAGGUGGUG------CCGGAUGaGuGGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 5821 0.71 0.604237
Target:  5'- aGUCCGgCGgcggUGGCCgccACUCGCCUGGCc -3'
miRNA:   3'- -CAGGUgGU----GCCGGa--UGAGUGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 6227 0.69 0.754599
Target:  5'- -cCCGCCGCGGCC-GC-CGCgaGACu -3'
miRNA:   3'- caGGUGGUGCCGGaUGaGUGgaCUGu -5'
24336 3' -56.7 NC_005264.1 + 9877 0.69 0.715612
Target:  5'- gGUCCcggcgcGCCACGGCCUuCcCAgcCCUGGCGg -3'
miRNA:   3'- -CAGG------UGGUGCCGGAuGaGU--GGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 12303 0.66 0.881067
Target:  5'- -cCCGCC-CGaGCCUggaGC-CGCCUGACc -3'
miRNA:   3'- caGGUGGuGC-CGGA---UGaGUGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 20020 0.67 0.859042
Target:  5'- gGUCUACCACGGCgcGCUCGCacccguGCAg -3'
miRNA:   3'- -CAGGUGGUGCCGgaUGAGUGgac---UGU- -5'
24336 3' -56.7 NC_005264.1 + 20034 0.66 0.894661
Target:  5'- aGUCCuACCAUGGCCUgGCaugUCGCCacGCGg -3'
miRNA:   3'- -CAGG-UGGUGCCGGA-UG---AGUGGacUGU- -5'
24336 3' -56.7 NC_005264.1 + 26050 0.68 0.764101
Target:  5'- uGUCCGCC-CGGCC-ACgCGCCgaaagGACu -3'
miRNA:   3'- -CAGGUGGuGCCGGaUGaGUGGa----CUGu -5'
24336 3' -56.7 NC_005264.1 + 36731 0.68 0.773486
Target:  5'- -gCCGCCGCGcauuccuugcccGCCUACUgGCCaGACu -3'
miRNA:   3'- caGGUGGUGC------------CGGAUGAgUGGaCUGu -5'
24336 3' -56.7 NC_005264.1 + 38545 0.71 0.594079
Target:  5'- -cCCGCCGucCGGCCgcgACUCGCCUcccGGCGc -3'
miRNA:   3'- caGGUGGU--GCCGGa--UGAGUGGA---CUGU- -5'
24336 3' -56.7 NC_005264.1 + 50454 0.7 0.705665
Target:  5'- -aCCGCCAaGGCgCUGCUCaACCUGGu- -3'
miRNA:   3'- caGGUGGUgCCG-GAUGAG-UGGACUgu -5'
24336 3' -56.7 NC_005264.1 + 51102 0.66 0.866595
Target:  5'- -gCCgguGCUGCGGUCUGCUCgcGCCUcGACGc -3'
miRNA:   3'- caGG---UGGUGCCGGAUGAG--UGGA-CUGU- -5'
24336 3' -56.7 NC_005264.1 + 57605 0.66 0.894661
Target:  5'- cGUUUgcuCCGCGGCCUGCUCGCagucGuACAc -3'
miRNA:   3'- -CAGGu--GGUGCCGGAUGAGUGga--C-UGU- -5'
24336 3' -56.7 NC_005264.1 + 60621 0.66 0.881067
Target:  5'- aGUUCugUGCGGCCcuauCUCGCgaGGCGa -3'
miRNA:   3'- -CAGGugGUGCCGGau--GAGUGgaCUGU- -5'
24336 3' -56.7 NC_005264.1 + 61802 0.7 0.695657
Target:  5'- cUCCACCG-GGCCgcggGCaUCGCCgGGCAg -3'
miRNA:   3'- cAGGUGGUgCCGGa---UG-AGUGGaCUGU- -5'
24336 3' -56.7 NC_005264.1 + 62980 0.68 0.800854
Target:  5'- -gCCACCGCGGCUUuggcggACUCcaaggcguGCUUGGCGc -3'
miRNA:   3'- caGGUGGUGCCGGA------UGAG--------UGGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 64441 0.68 0.773486
Target:  5'- cGUCUGCCGCGGCuCUaACUC-CCUGu-- -3'
miRNA:   3'- -CAGGUGGUGCCG-GA-UGAGuGGACugu -5'
24336 3' -56.7 NC_005264.1 + 65456 0.7 0.655184
Target:  5'- -cUCugCACGGCCUGCggGCCUG-CGa -3'
miRNA:   3'- caGGugGUGCCGGAUGagUGGACuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.