miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 3' -56.7 NC_005264.1 + 110719 0.66 0.894661
Target:  5'- cUCCAUCACcggaGGCCUccuGCUCGCUUcGCGg -3'
miRNA:   3'- cAGGUGGUG----CCGGA---UGAGUGGAcUGU- -5'
24336 3' -56.7 NC_005264.1 + 62980 0.68 0.800854
Target:  5'- -gCCACCGCGGCUUuggcggACUCcaaggcguGCUUGGCGc -3'
miRNA:   3'- caGGUGGUGCCGGA------UGAG--------UGGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 3165 0.67 0.835187
Target:  5'- -aCCACCGaacgcguccuUGGCCUugUCaaagaACCUGGCc -3'
miRNA:   3'- caGGUGGU----------GCCGGAugAG-----UGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 144234 0.67 0.851285
Target:  5'- cGUCCGCUGCGGUCUucuccggcugcuACcgCACC-GACAc -3'
miRNA:   3'- -CAGGUGGUGCCGGA------------UGa-GUGGaCUGU- -5'
24336 3' -56.7 NC_005264.1 + 51102 0.66 0.866595
Target:  5'- -gCCgguGCUGCGGUCUGCUCgcGCCUcGACGc -3'
miRNA:   3'- caGG---UGGUGCCGGAUGAG--UGGA-CUGU- -5'
24336 3' -56.7 NC_005264.1 + 136692 0.66 0.866595
Target:  5'- aGUCCucGCCGCGGCCUGggaCAUCaUGGCc -3'
miRNA:   3'- -CAGG--UGGUGCCGGAUga-GUGG-ACUGu -5'
24336 3' -56.7 NC_005264.1 + 73664 0.66 0.873938
Target:  5'- -gCCGCCgggACGacCCUACUUGCCUGGCc -3'
miRNA:   3'- caGGUGG---UGCc-GGAUGAGUGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 131330 0.66 0.881067
Target:  5'- -cCCGCC-CGaGCCUggaGC-CGCCUGACc -3'
miRNA:   3'- caGGUGGuGC-CGGA---UGaGUGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 20034 0.66 0.894661
Target:  5'- aGUCCuACCAUGGCCUgGCaugUCGCCacGCGg -3'
miRNA:   3'- -CAGG-UGGUGCCGGA-UG---AGUGGacUGU- -5'
24336 3' -56.7 NC_005264.1 + 64441 0.68 0.773486
Target:  5'- cGUCUGCCGCGGCuCUaACUC-CCUGu-- -3'
miRNA:   3'- -CAGGUGGUGCCG-GA-UGAGuGGACugu -5'
24336 3' -56.7 NC_005264.1 + 36731 0.68 0.773486
Target:  5'- -gCCGCCGCGcauuccuugcccGCCUACUgGCCaGACu -3'
miRNA:   3'- caGGUGGUGC------------CGGAUGAgUGGaCUGu -5'
24336 3' -56.7 NC_005264.1 + 125254 0.69 0.754599
Target:  5'- -cCCGCCGCGGCC-GC-CGCgaGACu -3'
miRNA:   3'- caGGUGGUGCCGGaUGaGUGgaCUGu -5'
24336 3' -56.7 NC_005264.1 + 93799 0.71 0.594079
Target:  5'- -gCgGCCGCGGCCaagagaucgACUCGCCgUGGCAc -3'
miRNA:   3'- caGgUGGUGCCGGa--------UGAGUGG-ACUGU- -5'
24336 3' -56.7 NC_005264.1 + 157572 0.71 0.594079
Target:  5'- -cCCGCCGucCGGCCgcgACUCGCCUcccGGCGc -3'
miRNA:   3'- caGGUGGU--GCCGGa--UGAGUGGA---CUGU- -5'
24336 3' -56.7 NC_005264.1 + 124847 0.71 0.604237
Target:  5'- aGUCCGgCGgcggUGGCCgccACUCGCCUGGCc -3'
miRNA:   3'- -CAGGUgGU----GCCGGa--UGAGUGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 83436 0.71 0.614415
Target:  5'- uUCCGCCGCGGCCUcGCcaCGCCcgcGGCGg -3'
miRNA:   3'- cAGGUGGUGCCGGA-UGa-GUGGa--CUGU- -5'
24336 3' -56.7 NC_005264.1 + 65456 0.7 0.655184
Target:  5'- -cUCugCACGGCCUGCggGCCUG-CGa -3'
miRNA:   3'- caGGugGUGCCGGAUGagUGGACuGU- -5'
24336 3' -56.7 NC_005264.1 + 61802 0.7 0.695657
Target:  5'- cUCCACCG-GGCCgcggGCaUCGCCgGGCAg -3'
miRNA:   3'- cAGGUGGUgCCGGa---UG-AGUGGaCUGU- -5'
24336 3' -56.7 NC_005264.1 + 50454 0.7 0.705665
Target:  5'- -aCCGCCAaGGCgCUGCUCaACCUGGu- -3'
miRNA:   3'- caGGUGGUgCCG-GAUGAG-UGGACUgu -5'
24336 3' -56.7 NC_005264.1 + 128903 0.69 0.715612
Target:  5'- gGUCCcggcgcGCCACGGCCUuCcCAgcCCUGGCGg -3'
miRNA:   3'- -CAGG------UGGUGCCGGAuGaGU--GGACUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.