miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24337 3' -56.6 NC_005264.1 + 159034 1.07 0.003361
Target:  5'- gCAGGGAGCACCUCCUCGCAACAACCGc -3'
miRNA:   3'- -GUCCCUCGUGGAGGAGCGUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 127334 0.73 0.502662
Target:  5'- -cGGGGGCACCUgCgcCGCGGCGucGCCGu -3'
miRNA:   3'- guCCCUCGUGGAgGa-GCGUUGU--UGGC- -5'
24337 3' -56.6 NC_005264.1 + 8307 0.73 0.502662
Target:  5'- -cGGGGGCACCUgCgcCGCGGCGucGCCGu -3'
miRNA:   3'- guCCCUCGUGGAgGa-GCGUUGU--UGGC- -5'
24337 3' -56.6 NC_005264.1 + 58539 0.72 0.581616
Target:  5'- -uGGGAauuuGCACCUCCUC-CGGcCGACCGc -3'
miRNA:   3'- guCCCU----CGUGGAGGAGcGUU-GUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 1090 0.72 0.601832
Target:  5'- gCGGGGAGaACCU-CUCGCAGCucuACCu -3'
miRNA:   3'- -GUCCCUCgUGGAgGAGCGUUGu--UGGc -5'
24337 3' -56.6 NC_005264.1 + 120117 0.72 0.601832
Target:  5'- gCGGGGAGaACCU-CUCGCAGCucuACCu -3'
miRNA:   3'- -GUCCCUCgUGGAgGAGCGUUGu--UGGc -5'
24337 3' -56.6 NC_005264.1 + 128274 0.71 0.642473
Target:  5'- --uGGAGUAUUUCUUCGCGuCAACCGg -3'
miRNA:   3'- gucCCUCGUGGAGGAGCGUuGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 86847 0.7 0.672895
Target:  5'- cUAGGGGGCGCCagCUaGCGGCGugUGg -3'
miRNA:   3'- -GUCCCUCGUGGagGAgCGUUGUugGC- -5'
24337 3' -56.6 NC_005264.1 + 36379 0.7 0.682981
Target:  5'- gCGGGGAGUAUCUCCgCGCuagGCG-CCa -3'
miRNA:   3'- -GUCCCUCGUGGAGGaGCGu--UGUuGGc -5'
24337 3' -56.6 NC_005264.1 + 123020 0.7 0.711965
Target:  5'- gCAGGGcGGCacauGCCUCCUCGCccaccaggggcuuGGCgGGCCGa -3'
miRNA:   3'- -GUCCC-UCG----UGGAGGAGCG-------------UUG-UUGGC- -5'
24337 3' -56.6 NC_005264.1 + 3993 0.7 0.711965
Target:  5'- gCAGGGcGGCacauGCCUCCUCGCccaccaggggcuuGGCgGGCCGa -3'
miRNA:   3'- -GUCCC-UCG----UGGAGGAGCG-------------UUG-UUGGC- -5'
24337 3' -56.6 NC_005264.1 + 28031 0.7 0.712956
Target:  5'- -cGGGAGguCUUCCggcgcgCGCGAC-GCCGg -3'
miRNA:   3'- guCCCUCguGGAGGa-----GCGUUGuUGGC- -5'
24337 3' -56.6 NC_005264.1 + 132942 0.69 0.732614
Target:  5'- aCGGGGuAGCGCCgcacgCCuUCGCGGCAAgUa -3'
miRNA:   3'- -GUCCC-UCGUGGa----GG-AGCGUUGUUgGc -5'
24337 3' -56.6 NC_005264.1 + 102205 0.69 0.741353
Target:  5'- gCGGGGAucaagcuGCugCUCCUgCGCGA--GCCGg -3'
miRNA:   3'- -GUCCCU-------CGugGAGGA-GCGUUguUGGC- -5'
24337 3' -56.6 NC_005264.1 + 116251 0.69 0.761434
Target:  5'- gCAGGGAcagaGCCUCCgcacgCGCGACuuggaAGCCGu -3'
miRNA:   3'- -GUCCCUcg--UGGAGGa----GCGUUG-----UUGGC- -5'
24337 3' -56.6 NC_005264.1 + 35582 0.69 0.761434
Target:  5'- gGGGGAGCugCUgCg-GCuuCGGCCGa -3'
miRNA:   3'- gUCCCUCGugGAgGagCGuuGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 154609 0.69 0.761434
Target:  5'- gGGGGAGCugCUgCg-GCuuCGGCCGa -3'
miRNA:   3'- gUCCCUCGugGAgGagCGuuGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 120146 0.69 0.770827
Target:  5'- --cGGAGCGCCggCCg-GCGAUGACCGa -3'
miRNA:   3'- gucCCUCGUGGa-GGagCGUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 29681 0.69 0.770827
Target:  5'- uCAGGGAGCGuCCagCCUCGU--CAuCCGg -3'
miRNA:   3'- -GUCCCUCGU-GGa-GGAGCGuuGUuGGC- -5'
24337 3' -56.6 NC_005264.1 + 133668 0.68 0.789237
Target:  5'- uGGGGAGCuagaggaacGCCUgCUCGCcGCGguccuuGCCGc -3'
miRNA:   3'- gUCCCUCG---------UGGAgGAGCGuUGU------UGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.